Protein

View in Explore

Genbank accession

XLM56124.1 [GenBank]

Protein name

structural protein

RBP type

Evidence RBPdetect2

Probability 0,94

Protein sequence

MANRIQLRRGGAQEWANANPTLAQGELGIELDTGRFKIGDGVSAWNTLRYERPVESTSNTANTLVQRDTDGNFSAGTITATLIGNASTAARLASTRQIQLSQDITASGVFDGSANLNLNAELTLVSTLPHYDGTGTPTGTYTSVTVDAKGRIINASNPSTLAAYNLDGNVEGSSAQPYDLDLAAISGLTTTGIISRTSGGSMATRTITGTATRIAINDGAGISGNPTIDLIVTAVTPGDYNTESLTSVSGVGGNSEPFGTETVNATKFTVDAYGRLTSATNVPIATATEGSKYASYSAGTTYARYDIIEEGGNVYQAIQGITAGSGAPSHTDSSDAGGWRYLAAAATEQKGLASFAQEDFDVDSNGHVTIAALGVDNTQLQNNRISFADGNTKEDFELDQELTSTTGYRGFNYLNYIKVNDTSGNLLVGANNTGDGGAGALDVNVRSYFSDPDITLDGVVAQTLDKTGDGDLTLQLTQNTASNRNFNILTTNAGAGTSNIIVTAEDTVQISASEATGKVWVEDARFQDNYIATANATMNLDPGDDRAVTGLVRVWGDLQVDGVTTTVNSTTMTVDDVVLTLGGDTAPASDDNLDRGVEFRYYDTQARLGFYGWDTNYTDLGGHEGGYRFLHAATNSSETFSGTDSGIIAGNLKLTTNTNSTSNTTGDLVVAGGVGITQDVNIGGLLDVDGTFRANSTSRFDDTMVLRGASKSLQFQNGTGTVKSEIHTTSGNAEFGGILTVTGATDLNNTLNVAGFTYLENTDEPQIALNSGTGIYEIQNSDYGAFRFDGGGYIEGDFMFNSDVYVNGQIVQKEDATATFNRQNYLEVRYRQIIGTRAALTPSYATDSNSNLRVYGGAGVTTSLHIGGTDAGEGLFVGKEGSGDTVKFSVLGASGNTDIEGTLNVEGQVTIQDSVIINAANEVFSIRNGSGVAKFDVDTDNGNTLIEGTLNVNGTVDVDADFAVRNGTTDKFFVDNVTGNTTIQGTLNSVGAVDFDSTLNVDNNTTLGGTLTVTGTSEFNNTVDVDANFAVRTSLGVDKFTVASASGNVATDGTLVVQGQTTINDSLIVDAANEVFSIRNGSAVEKFGVDADNGNTNIIGTLTVGDATQINDTLGVTGVTSITNSTDQTLTGLYGADGAVRITGGVGVQRNLAVGGNMRVYGDFEITGSTTQSGNTGFSGRVSITNTSDATSFSDNSVALTTDGGLRVSKNAWVGGDFYVWDDANSRNAFYVDTSTGDATLHNTLTVGGNLVVNGTTTTINSTVTTLDDPIITLGGDTAPVSNDGKDRGVEFRYYDGSAKVGFFGYDRSSSQFTFLTDATNNAEVHTGTDASVRAGSLRLTSAGTALDVDNNANIDGTLTVDGQITSNVATGNAPFVVASTTKVINLNADLLDGLTTATAATGNTVVIRDASGDFAANVITMATGTITGAATVGTTLGVTGATTLSSTLGVTGATTLSSTLGVTGVTTLTGLLNANGGIAVDTNNFTVDGTTGAVVTASTLNVGSTSSFTGAITATGGVIGNVTGNLVAAISTGKTFNPETDSTYNLGASTLRWATAYVDSLNAGTSITTAGTLSVTGTSTFTGEISANGGIALQDTDKATFGNDDDMQIYWSGTQNRIDTEGPFQIRNSNTSSGISFYDGDNTNFMFKALPLGAIELYHNGTKTFETTATGATLTGVLVATSLTGNVTGNVTGTVSDISNHTTDALAEGSTNLYYTDERVDDRIDALFVASTGITKVYDDVAGTYTLSVTQVDINTDNVTEGSTNLFTTAARTRTHFTYGTGIEHDGSGTLSVTQADINTDNVTEGSTNIFYTEARFTTSLGTKTTTDLAEGTNLYYTDARADARIAAATTDNLSEGATNLYYTDARADARIAAADTDNLSEGLTNLYYTDARAEASFDTKIAAASTTDLSEGTNQYYTEARVQTKLDNAFAQLQAMLNNLATTTTLTLNLSGDPTPGAVVTAGAVTEGGVGGFTAGTGVATSGGTGNGLTVDTTVVGGVITAVAVNAGGSDYLIDDTITITNPNAGGVATFNLATIVGGTNYVTGTALATTGGTGGATLTVDITASAGAITNVTINNAGTGYTAGDTITIVQPIGADGVNPASGGTVDVSTVFVDATFALADITTMEVGATVTGATSGTTGVITALGTNQITVDTVSGFFKVGEVVSANDVTTLTISSFA

Physico‐chemical properties

protein length:	2182 AA
molecular weight:	224021,52430 Da
isoelectric point:	4,11494
aromaticity:	0,06737
hydropathy:	-0,11109

Domains

Domains [InterPro]

DC_1619
ATT
1–452

DC_1619 DC_1617 DC_0029

SSF69349
STR
4–242

SSF69349 DC_1607 DC_1617 DC_0029

IPR041352
ATT
5–43

IPR041352

XLM56124.1

1 2182

Architecture

ATT

STR

RBD

ATT 1-452 | STR 453-1447 | RBD 1855-2182

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_1619	ATT	DC_1619	1	452	Novel HMM	DC_1619	N-terminal	Low	Positional only	123 proteins / 123 hits
SSF69349	STR	SSF69349	4	242	Merged direct domain	SSF69349	Central	Low	Positional only	153 proteins / 153 hits
IPR041352	ATT	DC_0533	5	43	InterPro cluster	Major tropism determinant, N-terminal domain	Central	Medium	Text match	295 proteins / 296 hits
DC_1607	STR	DC_1607	331	912	Novel HMM	DC_1607	Central	Low	Positional only	159 proteins / 159 hits
DC_1617	STR	DC_1617	906	1067	Novel HMM	DC_1617	Central	Low	Positional only	43 proteins / 43 hits
DC_1617	STR	DC_1617	1063	1447	Novel HMM	DC_1617	Central	Low	Positional only	43 proteins / 43 hits
DC_0029	RBD	DC_0029	1855	2034	Novel HMM	DC_0029	C-terminal	Low	Positional only	131 proteins / 131 hits
DC_0029	RBD	DC_0029	2023	2182	Novel HMM	DC_0029	C-terminal	Low	Positional only	131 proteins / 131 hits

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Synechococcus phage WH25-B [NCBI]	3384917	Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host	Synechococcus sp. WH 7803 [NCBI]	32051	Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Genbank protein accession

XLM56124.1 [NCBI]

Genbank nucleotide accession

PQ638372 [NCBI]

CDS location

range 41234 -> 47782
strand +

CDS

ATGGCAAATAGAATTCAATTAAGAAGAGGTGGCGCTCAGGAATGGGCAAACGCTAACCCAACCTTGGCACAAGGTGAACTCGGAATCGAACTTGATACTGGTCGTTTCAAAATCGGTGACGGTGTTTCTGCTTGGAACACGCTGAGATATGAACGTCCTGTTGAGTCTACCTCTAATACGGCAAATACTCTTGTACAGAGAGATACTGATGGTAACTTCTCTGCAGGTACTATTACTGCAACTCTGATTGGTAATGCTTCTACTGCTGCGCGTCTGGCATCTACCAGACAAATTCAGTTATCTCAAGACATCACTGCTTCTGGTGTTTTTGATGGTTCTGCAAACCTGAACCTTAATGCAGAACTCACGCTTGTTTCAACTCTGCCTCATTACGACGGTACAGGAACACCTACAGGAACATACACCTCTGTTACTGTAGATGCGAAGGGTAGAATTATTAATGCTTCAAATCCATCTACTCTTGCTGCATACAATCTTGACGGTAACGTAGAGGGTTCTTCTGCACAACCTTATGACTTAGACCTTGCTGCAATTTCTGGTCTGACCACTACTGGTATTATTTCCAGAACTTCTGGTGGTAGCATGGCAACCAGAACTATTACTGGTACTGCAACTAGAATTGCTATTAACGATGGTGCTGGTATTTCTGGTAACCCAACAATTGACCTTATTGTTACAGCAGTAACACCTGGTGACTATAATACGGAATCTCTGACATCCGTAAGTGGTGTTGGTGGTAACAGCGAACCATTCGGTACAGAAACTGTAAACGCTACGAAATTTACAGTTGATGCCTATGGTCGTTTAACAAGTGCCACAAATGTACCTATTGCTACTGCTACTGAGGGTAGTAAGTATGCTAGCTATAGTGCAGGCACAACTTATGCTCGCTATGACATCATCGAAGAAGGCGGTAACGTTTACCAAGCAATTCAAGGTATTACTGCAGGTTCTGGTGCCCCAAGTCATACTGATAGCAGCGATGCTGGAGGATGGCGCTACCTCGCGGCTGCGGCAACAGAGCAGAAGGGATTGGCTTCCTTTGCACAGGAAGATTTCGATGTTGACAGCAACGGGCACGTTACCATCGCCGCCCTCGGTGTAGATAATACTCAATTACAGAATAATAGAATTTCTTTTGCTGATGGAAATACAAAAGAAGATTTTGAACTTGATCAAGAACTTACTAGCACCACTGGATACCGAGGATTCAATTATCTTAACTATATCAAAGTTAATGATACGAGCGGTAATCTACTTGTTGGCGCTAATAATACAGGGGACGGCGGAGCTGGGGCACTTGATGTCAATGTACGCTCGTACTTCAGTGATCCTGATATCACTCTCGATGGTGTTGTTGCTCAAACCCTGGACAAAACTGGAGATGGTGACCTCACTCTTCAATTAACACAGAATACTGCTTCTAACAGAAACTTTAATATCCTGACAACCAATGCTGGTGCAGGAACTAGTAACATCATTGTTACTGCCGAAGATACTGTGCAGATTAGTGCATCTGAAGCAACAGGTAAAGTTTGGGTAGAAGATGCACGTTTCCAAGATAATTACATCGCCACAGCGAATGCGACGATGAATCTTGACCCTGGCGATGATCGCGCCGTAACTGGTCTGGTTCGTGTCTGGGGTGACCTCCAAGTTGATGGTGTAACGACAACTGTCAACTCAACAACCATGACAGTTGACGATGTTGTACTCACTCTTGGTGGCGACACTGCTCCTGCATCTGATGACAACCTCGATCGTGGTGTTGAGTTCCGTTATTATGACACTCAAGCACGTCTTGGTTTCTATGGTTGGGATACTAACTACACTGATTTGGGTGGTCACGAAGGCGGTTATCGTTTCCTTCATGCTGCTACAAATAGTAGCGAAACTTTTTCTGGTACTGATTCTGGTATTATTGCTGGTAATCTTAAGTTAACAACTAATACCAACTCGACTTCTAATACGACTGGCGACCTTGTAGTTGCTGGTGGTGTTGGTATTACTCAGGATGTAAATATCGGTGGTCTGTTAGATGTTGATGGCACCTTCCGTGCTAACAGCACTTCCCGCTTTGATGACACCATGGTTCTTCGCGGTGCATCTAAGTCACTTCAGTTCCAGAATGGTACTGGCACTGTTAAATCTGAGATTCATACAACTTCTGGTAATGCTGAGTTTGGTGGTATTCTTACTGTAACTGGTGCTACTGACCTTAATAACACTCTGAACGTTGCTGGATTTACATATCTGGAAAATACAGACGAACCTCAGATTGCTCTGAACTCTGGCACTGGTATCTATGAGATTCAGAACAGCGACTACGGTGCATTCCGATTTGACGGTGGTGGATACATTGAAGGCGACTTCATGTTTAACTCCGATGTATACGTCAATGGTCAGATTGTTCAGAAAGAAGACGCTACCGCAACCTTTAACAGACAAAACTACCTGGAAGTTCGTTATCGTCAGATTATTGGTACTAGAGCTGCTCTTACTCCTTCTTATGCAACTGATAGTAATTCTAACTTGAGAGTATATGGTGGTGCTGGTGTTACTACAAGTCTGCACATCGGTGGTACGGATGCTGGCGAAGGTCTGTTTGTTGGTAAAGAAGGCAGCGGCGATACCGTTAAGTTCTCTGTTCTTGGTGCATCTGGTAACACTGACATTGAAGGCACTCTGAACGTTGAAGGTCAAGTAACTATTCAAGATAGTGTAATCATCAACGCTGCAAATGAAGTCTTCTCTATTAGAAATGGTTCTGGAGTTGCAAAGTTTGATGTTGATACTGACAACGGCAATACTTTAATTGAAGGCACTCTGAATGTTAATGGCACAGTTGATGTTGACGCAGACTTCGCTGTTAGAAACGGCACAACCGACAAGTTCTTTGTTGACAACGTAACTGGTAATACAACAATTCAAGGTACTCTCAACTCTGTTGGTGCAGTTGACTTTGACAGCACACTGAACGTTGATAACAACACAACTCTGGGTGGTACTCTGACAGTTACAGGAACCTCTGAGTTTAATAACACTGTTGATGTTGACGCCAACTTTGCTGTTAGAACTTCTCTTGGTGTTGACAAGTTTACCGTTGCATCTGCTTCTGGTAACGTCGCAACTGACGGTACTCTGGTTGTTCAGGGTCAGACAACTATCAATGATTCTCTGATTGTTGATGCTGCTAACGAAGTCTTCTCCATCAGAAATGGTTCTGCCGTTGAGAAGTTTGGTGTTGACGCAGACAACGGTAATACAAATATCATCGGCACGCTGACTGTTGGTGATGCAACTCAGATTAATGATACTCTGGGTGTTACTGGTGTTACTTCCATCACTAATTCCACTGATCAAACTCTGACAGGTCTCTACGGTGCTGATGGTGCAGTTCGTATTACTGGTGGTGTTGGTGTTCAAAGAAACCTCGCTGTTGGCGGCAACATGCGTGTCTATGGTGACTTTGAGATTACTGGTAGCACCACACAGTCTGGTAACACTGGTTTCAGTGGTCGTGTTTCGATTACCAATACTTCAGATGCTACATCATTCTCTGATAACTCTGTCGCTCTTACAACCGATGGCGGTTTAAGAGTAAGCAAGAATGCATGGGTCGGTGGTGATTTCTATGTCTGGGATGATGCAAACTCTAGAAATGCATTCTATGTTGATACAAGCACTGGTGATGCAACTCTACACAATACACTGACAGTTGGAGGAAACTTAGTTGTAAATGGAACGACCACTACTATTAATTCTACGGTCACAACTCTCGATGACCCTATTATTACTCTGGGTGGTGACACAGCACCAGTCTCTAACGACGGCAAGGACCGTGGTGTTGAGTTCCGTTATTACGACGGCTCTGCGAAAGTGGGCTTCTTCGGATATGACAGATCCTCCTCGCAATTCACATTCCTGACTGATGCAACTAACAATGCTGAAGTTCATACTGGTACAGATGCTTCAGTTCGTGCTGGTTCTCTGAGACTCACTAGTGCTGGCACTGCACTTGACGTTGATAACAATGCCAACATCGATGGTACTCTGACCGTTGATGGTCAAATCACTTCTAACGTTGCTACAGGAAATGCTCCTTTCGTAGTTGCTTCTACTACTAAGGTCATTAATCTGAACGCTGACCTTTTAGATGGTCTGACGACTGCGACAGCAGCAACTGGAAATACAGTTGTGATTCGTGATGCATCTGGTGACTTTGCTGCTAACGTCATTACGATGGCAACAGGTACAATCACTGGTGCAGCGACGGTTGGTACAACTCTCGGTGTCACTGGTGCAACAACATTAAGTTCCACACTTGGTGTTACGGGTGCAACGACACTCAGCAGCACCTTAGGAGTTACTGGTGTTACTACACTTACTGGTCTTCTGAATGCTAATGGTGGTATTGCAGTCGATACAAACAACTTTACTGTTGATGGAACAACTGGTGCAGTTGTAACAGCAAGTACATTGAATGTTGGTAGCACGTCTTCCTTTACAGGCGCTATTACAGCAACTGGTGGAGTCATTGGTAATGTTACTGGTAATTTGGTCGCTGCTATTTCTACTGGTAAGACCTTTAACCCAGAAACTGATAGTACATACAACTTGGGTGCTAGCACACTGAGATGGGCAACTGCATATGTTGATTCTCTTAACGCTGGAACATCTATTACAACCGCTGGCACCCTGTCTGTAACAGGTACTTCCACCTTTACTGGTGAGATTAGTGCTAATGGTGGCATCGCTCTCCAAGATACCGATAAAGCGACATTCGGTAATGACGATGATATGCAGATTTACTGGAGTGGAACTCAGAATAGAATTGATACTGAAGGTCCTTTCCAGATTAGAAATAGTAATACATCATCGGGCATTTCTTTCTACGATGGCGATAATACTAACTTTATGTTCAAAGCGTTACCTCTGGGTGCGATTGAACTCTATCATAATGGTACAAAGACTTTTGAAACAACTGCAACAGGCGCAACCCTTACAGGTGTTCTGGTTGCAACATCTCTGACTGGAAATGTCACTGGTAATGTAACTGGTACAGTTTCTGACATCAGCAACCATACTACCGATGCTCTTGCAGAAGGCAGCACTAACCTTTACTACACTGATGAGCGTGTTGATGATAGAATTGATGCATTGTTTGTTGCAAGCACAGGTATCACTAAAGTATATGATGACGTAGCAGGCACTTATACGCTCTCTGTAACGCAGGTAGACATCAATACCGATAATGTCACTGAAGGGTCTACAAACCTCTTCACAACCGCTGCTAGGACCCGTACACACTTCACTTATGGTACAGGTATCGAACATGATGGTAGTGGCACTCTGAGCGTCACGCAGGCGGATATCAACACCGATAACGTAACTGAAGGTAGTACCAATATCTTCTACACTGAGGCACGTTTCACAACAAGTCTTGGAACTAAGACTACTACTGACCTTGCAGAAGGCACCAACCTTTATTATACAGATGCTCGCGCTGATGCTCGAATCGCTGCCGCAACTACAGATAACCTTTCTGAGGGTGCTACAAATCTCTACTATACAGATGCTCGTGCCGATGCTCGCATTGCTGCAGCGGACACAGATAACCTCTCAGAGGGTCTTACAAATCTGTACTACACCGATGCTCGTGCAGAGGCATCCTTCGATACAAAGATTGCTGCAGCGTCAACAACTGACCTGTCTGAAGGAACTAATCAGTACTATACTGAGGCAAGAGTTCAGACTAAACTTGATAATGCATTTGCTCAACTTCAAGCAATGCTCAACAACCTTGCAACTACTACCACACTGACATTAAATCTGTCTGGTGACCCCACTCCTGGCGCAGTTGTAACCGCTGGCGCAGTTACTGAAGGTGGTGTTGGCGGTTTCACTGCTGGCACTGGAGTTGCAACATCTGGTGGTACTGGTAATGGTTTGACAGTTGATACCACTGTTGTTGGTGGAGTAATCACTGCAGTTGCAGTAAATGCTGGCGGTAGTGATTATCTCATTGATGACACCATCACGATTACTAACCCCAATGCTGGTGGTGTTGCAACATTTAATCTTGCGACTATCGTTGGTGGTACAAACTATGTTACTGGCACTGCTTTGGCAACAACTGGTGGTACTGGAGGTGCTACTTTGACTGTAGACATCACTGCCTCTGCTGGTGCAATCACCAATGTTACAATTAACAATGCTGGTACTGGTTATACCGCTGGCGATACCATCACAATTGTTCAACCAATTGGTGCTGATGGTGTTAATCCTGCTTCTGGTGGTACGGTTGATGTTTCCACAGTCTTTGTTGATGCAACCTTTGCTCTTGCAGATATCACTACGATGGAAGTTGGAGCAACTGTAACTGGTGCTACTTCTGGCACTACTGGTGTTATTACTGCACTTGGCACCAACCAAATCACAGTTGATACCGTTAGCGGGTTCTTCAAAGTTGGAGAAGTCGTTAGTGCAAATGATGTTACTACACTTACAATCTCTTCATTCGCCTGA

Genome Context

Tertiary structure

PDB ID

9f39e8f8fc6bef7c33459da497b74dca12a1cfda8217d4ab17cdcc6c1346499b

ColabFold

Source ColabFold

Method ColabFold

Resolution 0,5009

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence