Protein

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Genbank accession
YP_009008376.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,85
Protein sequence
MPIPQITITPAGFAAIVNAENTGTAPVKVTQVGLTAQHFDVGTVGASVPAEFKRLTTFGGKAVADDTLHLNVRDDGTDTYTLRGFGLYLQDGTLFAVYSQSTPIMEKAAAATLLLATDIRFAKINATSIEVGDIDFINPPATTTQLGVVRLATEQEADAGSDHATAITPRGLARYINTRFGTGAPSTFVKTLLGLATAAMFRVELGLKSAALRDEGHGNGLNADLLDGAHGDYYLDWENFTGVPNRFPSAPHTHPIGEVDGLQPALDGKANRAGDTFTGPLAVNGAMLRSYGWNGVASNGILVLGDTGSSIVKNGAYFDFNNSAGGYTATLSAGGTIWTSGNFDPAKKVNKAGDTMTGPLRVNSSFHAQAAPGHNLIRMISNGAGATVVQSVTPDENAFAYLGIRGSVVDVSGPAQFDSTVTAAGQMLSARGCVRTNAGTDVLAGYVSFHRMDGTRMGYVGWGDANRLQYSAENGFTGHTFVGSVAATGGFDFGSSRRLKDIDGPMPYGLAEVRRIVTLIGRYKPEYNNDGRTRLFFDAEQFMVVMPEVVDPEVHR
Physico‐chemical
properties
protein length:556 AA
molecular weight: 58579,89860 Da
isoelectric point:5,65294
aromaticity:0,08633
hydropathy:-0,09335

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Stenotrophomonas phage Smp131
[NCBI] 		1168563 Uroviricota > Caudoviricetes > Peduoviridae > Simpcentumvirus Smp131 >
Host Stenotrophomonas maltophilia
[NCBI] 		40324 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009008376.1 [NCBI]
Genbank nucleotide accession
NC_023588.1 [NCBI]
CDS location
range 12412 -> 14082
strand +
CDS
ATGCCCATCCCCCAGATCACCATTACGCCGGCAGGCTTTGCCGCCATCGTCAACGCAGAGAACACGGGTACCGCGCCGGTCAAGGTCACACAGGTCGGCTTGACTGCTCAGCACTTCGATGTGGGCACCGTGGGCGCATCCGTGCCGGCGGAGTTCAAGCGCCTGACCACCTTCGGTGGCAAGGCCGTTGCCGACGACACGCTGCACCTGAACGTGCGCGACGACGGCACCGACACCTACACGCTGCGCGGCTTCGGCCTGTATCTGCAGGACGGCACGCTCTTTGCCGTCTACTCGCAGTCCACGCCCATCATGGAAAAGGCAGCGGCCGCCACCCTGCTGCTGGCCACGGACATTCGGTTCGCCAAGATCAACGCCACCAGCATCGAGGTCGGCGATATCGACTTCATCAATCCACCGGCGACGACCACGCAATTGGGTGTGGTGCGGTTGGCCACCGAGCAGGAGGCAGACGCCGGCAGCGATCACGCCACGGCAATCACACCGCGCGGCCTGGCCCGCTACATCAACACCCGCTTCGGCACCGGGGCGCCTTCCACCTTCGTCAAGACGCTGCTCGGCTTGGCCACCGCTGCTATGTTCCGCGTCGAGCTGGGCCTGAAGTCCGCTGCGCTGCGCGATGAGGGCCATGGGAACGGCCTCAACGCCGACCTGCTTGACGGTGCGCACGGCGATTACTACCTGGACTGGGAGAACTTCACTGGCGTGCCGAACAGGTTTCCGTCCGCTCCCCACACGCACCCCATCGGCGAGGTAGACGGCCTGCAGCCCGCGCTCGACGGCAAAGCCAACCGTGCCGGAGACACCTTCACCGGGCCGCTGGCGGTGAATGGGGCGATGCTGCGTTCTTACGGATGGAATGGAGTAGCCAGCAACGGAATTCTGGTGCTGGGTGATACCGGCTCCTCCATCGTTAAGAACGGGGCCTACTTCGATTTCAACAACTCGGCGGGCGGGTACACCGCCACCCTTTCTGCCGGCGGCACCATCTGGACCAGCGGCAATTTCGATCCGGCCAAAAAGGTCAACAAGGCCGGTGACACGATGACCGGCCCGCTTCGCGTCAACAGCTCTTTCCACGCGCAGGCGGCGCCGGGGCACAACCTAATCCGGATGATTAGCAACGGCGCTGGTGCCACTGTTGTCCAGTCGGTAACCCCCGACGAGAACGCATTCGCATACCTGGGAATCCGAGGCTCTGTTGTGGACGTCAGTGGGCCTGCCCAGTTTGACTCGACAGTGACTGCAGCTGGTCAGATGCTCAGCGCACGGGGATGCGTCCGAACCAACGCGGGCACCGACGTGCTGGCTGGGTACGTCTCCTTCCACCGGATGGACGGCACCCGCATGGGCTACGTCGGATGGGGCGATGCAAACCGACTGCAGTACTCGGCAGAGAACGGATTCACGGGGCACACATTTGTCGGCAGCGTCGCCGCTACTGGCGGCTTCGACTTCGGTTCGTCCCGAAGGCTGAAGGATATCGACGGCCCAATGCCTTACGGCCTTGCCGAGGTTCGACGGATCGTGACGCTTATCGGGCGCTACAAGCCCGAATATAACAACGATGGCCGCACGCGTCTGTTCTTCGACGCGGAGCAATTCATGGTGGTGATGCCCGAGGTCGTGGACCCGGAAGTGCATCGCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
51618a5a1b56b5ba4ac027c34e3c458d1b5f5b2eb3728b96be149b36c51810ca
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7331
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic sequence of temperate phage Smp131 of Stenotrophomonas maltophilia that has similar prophages in xanthomonads Lee,C.N., Tseng,T.T., Chang,H.C., Lin,J.W. and Weng,S.F. 2014 24472137 GenBank