Protein

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Genbank accession
QIG66000.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,78
TF
Evidence RBPdetect2
Probability 0,86
Protein sequence
MAYLGNTPFRYDNIAYLFSGRTGSTLTGLDINGKRLTVYAKNTQVFLNGVLQVEGVNYSVPTSSQIAFIDYSLVASDYVSIICSNIDNTNRISTDLAGKTYVFTGISGATISGTDSNGRLLTGINGTVDVFLNGVMLVEGVDFQTTSPTEIGLLAGVLEPTDHVIVRTFAYQSRFALAKDTKAEENLIVSSTTSNVRPTITFNDNGLSSKFYANGNQLIANTSIAATDFVYDGKSLIGTLDKVARVDIAQAFSNTEQTQIRANIGAFPRAGGTINGSISVDGGIYTAGTIEVGYNRTSDGPGVLDLHAVANTDYDARIIRNSGVNGSWEFINTGNGNTIFRSTGTSLYTFDNAIFSNSTIQATSSFRVASDSNRHLWFQKVDGTVGGLLYNDSTSGVMQLRAYNAAGTSYQTLTLDTNGNVTAQGNLYAGSGTVQAGSTAGTYCHLRFDGSLSKNGGTAYQILTTGDLTLDGVRTFGFNNAVSSGQPYFKHNNGTIVYLSYIGTNNYAYTNLGIQCETGGRIRMTTGNQINFHWNSGFYYNIDGNAYVLINSSASDKNLKENIQPLTNATETVKKLNPVTYNFKDNLPIANPKGNLAGFIAQELQEVMPNLVATSNLPNDDLNKEPETFLRYEDGADKQLIALLVGAVKELSARVEELEKKNG
Physico‐chemical
properties
protein length:663 AA
molecular weight: 71209,13360 Da
isoelectric point:5,17754
aromaticity:0,09502
hydropathy:-0,18944

Domains

Domains [InterPro]
DC_1671
RBD
8–663
DC_1671
IPR030392
CHP
555–662
IPR030392
IPR030392
CHP
555–612
IPR030392 Coil
QIG66000.1
1 663
Architecture
RBD
RBD 8-663
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QIG66000.1
1 663
Domain Start End Length (AA) Confidence
N-terminal 1 195 195 0,9315
Central domain 196 394 200 0,3341
C-terminal 395 663 268 0,9128
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-195
Central
196-394
C-terminal
395-663

Taxonomy

  Name Taxonomy ID Lineage
Phage Ochrobactrum phage vB_OspM_OC
[NCBI] 		2712956 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Ochrobactrum sp. POC9
[NCBI] 		2203419 Pseudomonadota > Alphaproteobacteria > Hyphomicrobiales > Brucellaceae > Ochrobactrum >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QIG66000.1 [NCBI]
Genbank nucleotide accession
MT028491.1 [NCBI]
CDS location
range 193171 -> 195162
strand +
CDS
ATGGCATATCTAGGTAATACCCCATTTCGCTATGACAATATAGCGTATCTTTTTTCGGGTAGAACCGGTTCAACTCTTACAGGACTTGATATTAACGGTAAGCGACTTACTGTTTACGCTAAAAATACTCAAGTCTTTTTGAATGGTGTTCTACAAGTTGAAGGTGTGAATTATTCGGTTCCAACTTCATCGCAAATTGCTTTCATCGATTATTCATTGGTTGCAAGTGACTATGTTTCGATCATTTGCAGTAATATCGATAATACAAACAGAATTTCGACTGATCTAGCCGGTAAGACATATGTGTTTACCGGGATTTCTGGTGCGACCATTTCAGGTACAGATTCAAACGGTCGTCTTCTAACCGGCATAAACGGCACTGTAGACGTTTTCTTGAACGGTGTGATGCTTGTTGAAGGTGTTGACTTCCAAACAACGTCACCTACCGAAATTGGCCTTTTGGCTGGTGTTCTGGAACCTACTGATCATGTGATTGTTAGAACGTTTGCTTATCAGTCTCGATTCGCATTGGCTAAGGACACCAAAGCCGAAGAAAATTTGATCGTTTCTTCAACGACAAGCAATGTTCGTCCAACCATCACATTCAACGATAATGGTTTGTCAAGCAAGTTTTATGCCAACGGAAATCAATTGATTGCAAATACGTCAATTGCAGCAACCGATTTCGTTTATGATGGTAAGAGTCTTATTGGAACCTTGGATAAGGTTGCACGTGTTGATATTGCTCAAGCATTCTCTAACACAGAACAAACACAAATTAGGGCAAATATTGGAGCATTTCCAAGAGCCGGTGGAACAATCAATGGTTCTATTTCTGTTGATGGTGGAATTTATACAGCGGGAACAATTGAAGTTGGGTATAATAGAACTTCGGATGGACCGGGTGTTCTAGACCTTCATGCTGTAGCTAATACAGATTACGATGCTCGAATTATTCGAAATTCCGGTGTTAATGGATCATGGGAATTCATCAATACTGGTAACGGAAACACAATATTTCGTTCTACAGGAACCAGCCTTTACACATTTGATAATGCCATTTTTTCAAACTCAACCATCCAAGCCACATCTTCATTTAGAGTAGCTTCTGATTCAAACAGACATCTTTGGTTCCAAAAAGTTGATGGGACTGTAGGCGGTCTTCTTTATAATGACTCTACTAGTGGCGTTATGCAATTACGTGCATATAATGCCGCCGGTACTTCATACCAAACTTTGACGTTGGATACCAATGGTAATGTTACGGCTCAAGGTAATCTATATGCTGGTAGTGGCACTGTACAGGCTGGTTCTACAGCCGGTACATATTGTCATTTAAGATTTGATGGAAGTCTTTCTAAAAATGGTGGTACTGCATATCAAATTCTCACTACCGGTGATTTAACTCTGGATGGTGTTAGAACATTTGGATTTAATAATGCTGTTTCAAGCGGACAACCTTATTTCAAACATAATAATGGTACTATTGTTTATCTTTCATATATAGGAACAAACAATTACGCATATACAAATCTAGGAATTCAGTGTGAAACTGGTGGTAGAATTCGTATGACTACCGGTAATCAAATTAACTTTCATTGGAATTCTGGTTTTTATTACAATATTGATGGTAATGCATACGTTCTTATCAATTCATCAGCATCAGATAAAAATCTAAAAGAGAATATTCAGCCACTAACAAATGCAACTGAAACAGTTAAAAAACTGAATCCAGTTACATATAATTTTAAAGATAATCTTCCAATTGCAAATCCAAAGGGAAATCTTGCTGGTTTTATTGCGCAAGAACTTCAAGAGGTTATGCCTAATCTTGTTGCAACGAGCAATCTTCCAAATGATGATTTGAACAAAGAACCAGAAACGTTCCTTCGTTATGAAGACGGTGCGGATAAACAACTTATTGCATTGCTTGTTGGTGCTGTAAAGGAATTGTCTGCAAGGGTAGAAGAATTAGAGAAAAAGAATGGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f743791437a216d5f8902cd52cfef220ab3623afc99a556f0f3de3eb65bbd805
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6711
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Identification and Characterization of First Virulent Phages, Including a Novel Jumbo Virus, Infecting Ochrobactrum spp. Decewicz,P., Golec,P., Szymczak,M., Radlinska,M. and Dziewit,L. 2020-03-18 — GenBank