Protein

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Genbank accession
UYD72317.1 [GenBank]
Protein name
capsid and scaffold
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAFNYTPLTETQKLKDMYPKVNDIGNFLKTEVNLSDVKQISQPDFNNILASIPDSGNYYVTNSKGAPSGEATAGFVRLDKRNVNYYKIYYSPYSSNKMYIKTYANGTVYDWISFKLDEGNLYNEGNTLNVKELTESTTQYATLVNPPKENLNTGWVNYKESKNGVSSLVEFNPVNSTSTFKMIRKLPVQEQKPNLLKDSLFVYPETSSSNIKTDNWNTPPFWGYTANSGRSGVRFRGENTIQIDDGNSTYPTAMTNRFKMGNELSVGDTITVSVYAKINDPALLKDNLVYFELAGYDTVDRTNNPYTGGRREITASEITTEWKKYSFTFTIPENTIGASGVKVNYVSLLLRMNCSSSKGNGAVVYYALPKLEKSSKVTPFITHENDVRKYDEIWSNWQEVISKDELKGHSPVDIEYNDYFKYQWWKSEVNEKSLKDLAMTVPQGYHTFYCQGSIAGTPKGRSIRGTIQVDYDKGDPYRANKFVKLLFTDTEGIPYTLYYGGYNQGWKLLKQSETSTLLWEGTLDFGSTEAVNLNDSLDNYDLIEVTYWTRSAGHFSTKRLDIKNTSNLLYIRDFNILNDSTGSSVDFFEGYCTFPTRASVQPGMVKSITLDGSTNTTKVASWNEKERIKVYNIMGINRG
Physico‐chemical
properties
protein length:639 AA
molecular weight: 72478,10980 Da
isoelectric point:6,52792
aromaticity:0,12676
hydropathy:-0,59343

Domains

Domains [InterPro]
DC_0568
STR
5–408
DC_0568
cd19958
STR
44–111
cd19958 G3DSA:2.60.120.260 DC_0448
UYD72317.1
1 639
Architecture
STR
STR 5-638 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UYD72317.1
1 639
Domain Start End Length (AA) Confidence
N-terminal 1 293 293 0,5850
Central domain 294 504 212 0,1776
C-terminal 505 639 134 0,9637
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-293
Central
294-504
C-terminal
505-639

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage LJT-1
[NCBI] 		2978978 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus aureus
[NCBI] 		1280 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UYD72317.1 [NCBI]
Genbank nucleotide accession
OP039102 [NCBI]
CDS location
range 107854 -> 109773
strand -
CDS
ATGGCATTTAACTACACGCCTCTTACTGAAACACAGAAGTTAAAAGATATGTATCCTAAAGTTAATGATATAGGTAACTTTTTAAAAACAGAAGTTAACCTTAGTGATGTAAAACAAATATCACAACCCGACTTTAATAATATTTTAGCATCTATACCTGATAGTGGTAACTACTATGTAACTAATTCAAAAGGTGCTCCTAGTGGAGAAGCTACGGCAGGATTTGTAAGATTGGATAAAAGAAATGTAAATTATTATAAAATTTACTATTCACCATATAGTAGTAATAAAATGTATATCAAGACTTATGCTAACGGTACTGTATATGATTGGATTAGTTTTAAATTAGATGAAGGTAACTTATACAATGAAGGTAATACTTTGAATGTAAAGGAACTTACTGAATCTACAACTCAATATGCAACACTAGTTAATCCTCCAAAAGAGAACTTAAATACAGGTTGGGTTAATTACAAAGAAAGTAAAAATGGTGTTTCCTCTTTAGTAGAATTTAACCCAGTTAACTCTACCTCAACTTTCAAGATGATAAGAAAGTTACCAGTACAAGAACAAAAACCTAACTTATTGAAAGATAGTTTATTTGTTTATCCTGAAACTAGCTCGTCAAATATTAAAACAGATAATTGGAATACACCCCCATTTTGGGGATACACAGCTAATAGTGGTCGTTCAGGAGTTAGATTCAGAGGGGAAAATACCATACAGATTGATGATGGTAATAGCACATATCCTACTGCAATGACTAATAGATTTAAGATGGGTAATGAGCTTTCTGTAGGGGATACAATTACTGTATCTGTCTATGCTAAAATTAATGACCCTGCATTACTGAAAGATAACTTAGTTTACTTTGAGCTAGCAGGATATGATACGGTAGATAGAACTAATAACCCTTATACAGGAGGACGTAGAGAAATAACAGCAAGTGAGATAACAACTGAGTGGAAAAAATATTCTTTCACGTTCACGATACCTGAAAATACAATAGGAGCATCAGGTGTTAAAGTTAACTACGTATCTTTATTACTAAGAATGAATTGTTCATCTAGTAAAGGTAATGGTGCTGTAGTATACTATGCCTTACCTAAATTAGAAAAATCATCTAAAGTTACACCATTTATTACACATGAAAATGATGTTCGTAAATATGATGAGATTTGGTCTAATTGGCAAGAAGTTATTAGTAAAGATGAATTAAAAGGTCACTCTCCTGTAGATATTGAATATAATGATTATTTTAAATATCAGTGGTGGAAATCTGAAGTTAATGAAAAGAGTTTAAAAGATTTAGCTATGACAGTACCTCAAGGATATCATACATTTTATTGTCAAGGCTCTATTGCCGGGACGCCTAAGGGACGTTCTATTAGAGGAACCATTCAGGTAGATTATGACAAAGGTGACCCCTACAGAGCTAATAAGTTTGTTAAATTATTGTTTACTGACACAGAAGGTATACCTTATACATTATACTACGGAGGGTATAATCAAGGTTGGAAACTCTTAAAGCAATCAGAAACTTCTACTTTACTATGGGAAGGTACTTTAGATTTTGGGTCTACGGAAGCTGTTAACTTAAATGACTCATTAGATAATTATGATTTAATTGAGGTAACTTATTGGACTCGTTCAGCAGGACATTTTTCTACAAAAAGATTAGATATAAAAAATACATCAAATTTACTGTATATTAGAGACTTTAATATTTTAAATGATAGTACAGGTTCTAGTGTAGACTTTTTTGAAGGGTATTGCACTTTCCCTACTAGAGCATCAGTACAACCTGGTATGGTAAAATCTATAACTTTAGACGGGTCTACAAATACAACAAAAGTAGCATCATGGAATGAAAAGGAACGTATAAAGGTATACAATATTATGGGAATTAATAGAGGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0124e05228d5e9c34ae4355f3a3adad940304a59e7d69e4df65dc8aa94930613
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6965
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50