Protein

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Genbank accession
YP_010111794.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MLKQEQHIIKGMTRDLTVSKFNPEFAYECKNIRITARDNSTLLTVTNERGNSELSILTSNGNPLQVLGTLIGYNVLNNYVTLFTTGDKDRIYRLENKQTYFEGKLLYEGNLNFNVNNPIENISVYENDNIQKVYWIDGLNQSRVINIVADSTVSGSWNDSSFDFVQDLELKETVTVVRDDLASGSFSSGVIQYAFTYYNKYGQESNIFYTSPIQYISFASRGASPEEKVSNSFTITIANPDTRFDYIRVYSIHRASIDATPNVLNVVDLPINAANVRAGETLTYTDNGTIGTSVDPTELLYVGGEEVVFGTMTQKDNTLFLGNADIKRKLVGPDIINSIKGGNISFNQRYVGNYVRTAGYYPYKNSLYLGSKIKSFKYLEWYRFGVQFQYKNGKWSEPIWINDAYNGPASGGMGYGISPSYNGALTTVQASYSLNSDIINKVVAQGFIRARGVVVYPTLIDREVVAQGILCPTVYNIGDRFGNSPFAQSSWFARPNLAFDIERNKSNWNGIGTLFGDYDKSKAAVISNKNVNLTIDPGTPSAKTILIDIVNKGAWAEFRHNKPVPNNWERNAEIQCIANTPAGPYTASKGSELNSYTASHAEYFFVDQNILTLHSPDIEFDEGVQNLDSSGLKLRIVGVVPITANASEIDIQTSTPANDTSKMGFYKETIGSENNSYHGLKNLISGAFWFDKMTNMKNVDDDHGYTESFFVYAWHRNGSLNNQGPVTEGSRTAMLDKKKISNLKFSSFSKYFNEPWLAYKANDATHTGITGVSIFNSNEQSLVRIPAPANSNLGDLNYYGNVDKVIAATRVDDAYSLTFDFSDGPKTEEFNRKNGYPIVVTGVNTAESFAHQLFTGGTFPIQFVKRSDGATLTEVPNGTDAVRMKYKSTPHAVFALNYATDGRQIVMPTNRETDYTDYWNVNDANVTKGGVNHFFWNPTAKSISESETQINDGVFQDVISEYTSNLTDNNYSYLYLAELYNDNITNRFGGQTEEAFENNIWLPGGEPINLLNADGTPVSYASLTYTEGDTFLERYDCLKTYSYTLEDQNSVTEIVSFMCETRVNIEGRYDRNRGQLNNLTMTPENFNKVNKVYSQKNNFFNYRGINHSKFNLNYFPNTVTWTKEKQLGSIIDTWTNITMASTLDLDGDKGEVISLNTYNNEIFCFQRKGFSNILFNSRVQIPASDGMPIEITNGMKVSGKRYVSNTIGCSNKWSIVESPSGLYFIDNETNSMYLFNGEVKSISDSLGMRQWVNENNTHINWNPVTYENFRGFYDKNNNDVYFVNNNWCLCYSELIGQFTSFMSYEKVPAMFNVGSEFYAFNNNKLWQQFNGDYNMFFGQYKPYSITVVANADEPADKIFNTVEFRADAYDGDNLAPTKTYDTLDVYNEYQHGRVTLTDLNGRPSPLKRKFRIWRANIPRANTPINGIPANNRDRIRNTWAYVKLSTETPNTYRTVFHDMTIHYFV
Physico‐chemical
properties
protein length:1465 AA
molecular weight: 165418,86710 Da
isoelectric point:5,34630
aromaticity:0,12901
hydropathy:-0,46908

Domains

Domains [InterPro]
IPR057889
STR
3–331
IPR057889 IPR057889 IPR057888
DC_1659
RBD
1305–1465
DC_1659
YP_010111794.1
1 1465
Architecture
STR
STR
RBD
STR 3-331 | STR 358-1323 | RBD 1324-1465
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010111794.1
1 1465
Domain Start End Length (AA) Confidence
N-terminal 1 468 468 0,6803
Central domain 469 1116 649 0,8954
C-terminal 1117 1465 348 0,2870
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-468
Central
469-1116
C-terminal
1117-1465

Taxonomy

  Name Taxonomy ID Lineage
Phage uncultured phage cr126_1
[NCBI] 		2772075 Uroviricota > Caudoviricetes > Crassvirales > Asinivirinae > Kolpuevirus
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010111794.1 [NCBI]
Genbank nucleotide accession
NC_055884 [NCBI]
CDS location
range 85139 -> 89536
strand +
CDS
ATGCTTAAACAAGAACAACATATAATTAAAGGTATGACTAGAGACTTAACAGTCTCAAAGTTCAATCCAGAGTTTGCATATGAATGTAAGAACATTAGAATAACTGCAAGAGATAACTCAACTCTACTAACAGTTACTAATGAAAGAGGTAATTCTGAGTTATCCATCCTCACTTCTAATGGTAATCCTCTTCAAGTGCTAGGTACTCTCATAGGATATAATGTCTTGAATAACTATGTTACTTTGTTTACTACTGGTGATAAGGATAGGATATATAGGTTGGAGAATAAGCAGACTTACTTTGAAGGCAAGCTTCTTTATGAAGGTAACTTGAACTTTAATGTCAATAATCCTATTGAGAATATCAGTGTATATGAGAATGATAACATACAGAAAGTATATTGGATAGATGGGTTAAATCAGTCTAGAGTTATAAACATTGTAGCTGATAGCACTGTTAGTGGAAGTTGGAATGATAGTTCATTTGACTTTGTACAGGACCTTGAATTAAAAGAGACTGTAACTGTAGTAAGAGATGACTTAGCTAGTGGTTCTTTCTCCTCTGGAGTTATACAATATGCTTTTACATACTATAATAAGTATGGTCAAGAGAGTAACATATTCTATACTTCCCCTATACAGTATATTTCTTTTGCAAGTAGAGGAGCTTCACCAGAAGAGAAAGTTAGTAACAGCTTCACTATTACTATAGCTAATCCTGATACAAGATTTGATTATATAAGAGTGTATTCAATACATAGAGCAAGTATAGATGCTACTCCTAATGTATTAAATGTAGTTGATTTGCCTATTAATGCAGCTAATGTAAGAGCAGGTGAGACACTTACTTATACTGATAATGGCACTATTGGAACCAGTGTTGACCCTACTGAACTTCTATATGTAGGAGGTGAAGAAGTAGTATTTGGTACTATGACTCAAAAGGATAATACACTATTTTTAGGTAATGCTGATATAAAGAGAAAGCTAGTTGGACCTGATATTATTAACTCTATTAAAGGTGGTAATATTAGCTTTAATCAAAGATATGTAGGTAACTATGTAAGAACAGCAGGATATTATCCTTATAAGAATAGCCTATACCTAGGCTCTAAGATTAAATCCTTCAAGTATCTTGAGTGGTACAGATTTGGTGTACAATTTCAGTATAAGAATGGTAAGTGGTCAGAACCAATATGGATTAATGATGCTTATAATGGACCAGCCTCAGGAGGCATGGGATATGGAATATCACCATCTTATAATGGTGCTTTAACAACTGTTCAAGCTAGTTATTCATTAAACTCTGATATAATCAATAAGGTAGTTGCACAAGGTTTCATAAGAGCTAGAGGTGTAGTAGTATATCCTACTCTTATAGATAGAGAAGTAGTTGCACAAGGTATTCTATGTCCTACTGTTTACAATATAGGAGATAGATTTGGCAATTCACCTTTTGCACAATCTTCATGGTTTGCAAGACCTAATCTAGCATTTGATATTGAAAGAAATAAGAGTAACTGGAATGGTATTGGTACTTTATTTGGAGACTATGATAAGTCTAAGGCAGCAGTAATCAGTAATAAGAATGTGAATCTTACTATAGACCCAGGAACTCCATCAGCAAAGACTATTCTTATTGATATAGTTAACAAAGGGGCATGGGCTGAGTTCAGACATAATAAACCAGTTCCTAACAACTGGGAAAGAAATGCTGAGATACAATGTATAGCTAATACACCTGCTGGTCCATATACTGCTAGTAAAGGTTCTGAGTTGAATAGTTATACAGCAAGTCATGCTGAATACTTCTTTGTAGACCAGAATATACTTACACTTCATTCACCAGATATTGAATTTGATGAAGGAGTTCAGAACTTAGATTCATCAGGTCTTAAGCTAAGAATAGTAGGTGTAGTACCTATTACAGCTAATGCTTCTGAAATAGATATACAGACCTCAACTCCTGCTAATGATACAAGCAAGATGGGATTCTATAAGGAGACTATAGGTTCTGAGAATAATTCATATCATGGATTGAAGAATCTTATCTCTGGTGCATTCTGGTTTGATAAGATGACTAATATGAAGAATGTAGATGATGACCACGGATATACAGAATCATTCTTTGTATATGCTTGGCATAGAAATGGTTCTCTAAATAATCAAGGTCCTGTTACTGAGGGTTCTAGAACTGCAATGCTTGATAAGAAGAAGATTTCTAACTTGAAATTCTCCTCATTCTCAAAATATTTTAATGAGCCTTGGCTGGCATATAAGGCTAATGATGCAACTCACACTGGCATTACTGGTGTTAGTATATTCAACTCAAATGAACAATCTTTAGTAAGAATACCAGCCCCTGCTAACTCAAATCTTGGAGATTTGAACTATTATGGTAATGTAGATAAAGTAATTGCAGCAACTAGAGTTGATGATGCTTATTCACTTACATTTGATTTCTCTGATGGCCCAAAAACTGAGGAATTCAATAGAAAGAATGGTTATCCTATAGTTGTGACTGGTGTTAATACTGCTGAATCTTTTGCTCATCAACTGTTTACTGGAGGTACATTCCCTATACAGTTTGTAAAGAGAAGTGATGGTGCTACTCTTACAGAAGTACCTAATGGTACTGATGCTGTAAGAATGAAGTATAAATCAACTCCTCATGCTGTATTTGCATTAAACTATGCTACTGATGGCAGACAGATAGTAATGCCTACTAATAGAGAGACTGACTATACAGACTATTGGAATGTTAATGATGCTAATGTAACTAAAGGAGGTGTTAATCACTTCTTCTGGAATCCTACAGCTAAATCTATTAGTGAAAGTGAGACTCAGATAAATGATGGTGTATTTCAAGATGTAATCTCTGAATATACAAGTAACCTAACGGATAATAACTATAGTTACTTATATCTTGCAGAGTTATATAATGATAATATTACTAATAGATTTGGTGGTCAGACAGAAGAAGCATTTGAGAATAATATATGGCTTCCTGGTGGAGAGCCTATTAATCTTCTTAATGCAGATGGAACTCCTGTAAGTTATGCTAGCCTTACATATACAGAAGGTGATACTTTTCTTGAAAGATATGACTGTCTTAAGACATACTCTTATACCCTTGAGGACCAGAATAGTGTTACTGAGATTGTATCATTCATGTGTGAGACAAGAGTAAACATTGAAGGTAGATATGATAGAAATAGAGGTCAGCTCAATAACTTGACAATGACTCCTGAAAACTTCAACAAAGTAAACAAGGTGTATAGTCAGAAGAATAACTTCTTTAACTATAGAGGTATCAATCATAGTAAGTTTAACCTAAACTACTTCCCTAATACAGTTACTTGGACTAAGGAGAAGCAATTAGGTAGCATTATTGATACTTGGACTAATATTACTATGGCATCTACTCTAGACCTTGATGGAGATAAGGGTGAAGTAATATCATTGAATACTTATAACAATGAGATATTCTGCTTCCAAAGAAAAGGATTCAGTAACATCTTATTTAACTCAAGAGTACAGATACCTGCATCTGATGGTATGCCTATTGAAATCACTAATGGTATGAAAGTTAGTGGTAAGAGATATGTTAGCAATACTATAGGATGTAGTAATAAGTGGTCTATAGTTGAGTCTCCTTCTGGTCTTTACTTCATTGATAATGAAACTAATTCAATGTATCTGTTTAATGGAGAAGTGAAGTCAATCTCAGATAGTCTTGGTATGAGACAATGGGTTAATGAAAATAATACTCATATAAACTGGAACCCTGTTACTTATGAGAACTTTAGAGGATTCTATGATAAGAATAACAATGATGTGTACTTTGTTAATAACAACTGGTGTCTATGTTACTCAGAGTTAATAGGTCAGTTTACTTCTTTCATGAGTTATGAAAAGGTTCCAGCTATGTTTAATGTAGGCAGTGAATTCTATGCTTTCAATAACAACAAACTATGGCAACAGTTTAATGGTGATTACAACATGTTCTTTGGTCAGTATAAACCTTATAGTATTACTGTAGTAGCTAATGCTGATGAGCCTGCTGATAAGATATTCAATACTGTTGAATTTAGAGCTGATGCTTATGATGGTGATAACCTTGCTCCTACTAAAACTTATGATACACTTGATGTATATAATGAGTATCAACATGGTAGAGTAACATTAACTGACTTAAATGGAAGACCTTCTCCTTTAAAGAGAAAGTTCAGGATATGGAGAGCTAATATACCAAGAGCTAATACACCTATTAATGGTATTCCAGCTAATAATAGAGATAGAATTAGAAATACTTGGGCATATGTTAAACTATCAACTGAAACACCTAATACATATAGAACAGTGTTCCATGATATGACAATACATTACTTTGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e83de76d1ef62dff93538824a63cd15041a63f19032fe7f68c94c30d0aa09243
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8729
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Taxonomic proposal: Crassvirales, a new order of highly abundant and diverse bacterial viruses Shkoporov,A.N., Stockdale,S.R., Guerin,E., Ross,R.P. and Hill,C. 2023-03-24 — GenBank