Protein

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Genbank accession
QXN60104.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MANWPNIQKQYKNAPSDEVIIRHGTINYVQDRESFAASMANARWSNEANYTAGSEIQGSDGKWYVAVVNTGSATSNSVDPVTRTDDTVWSESNNISDSELYAHTSYTWGTAPDGSNMAPSGVLFDFGSGKDRITVYNATNLPVAMGAVPNESFKAFKKPVLTTPNEISSLNFAFEGLVFSTGVGDWRIVSTSGIQITGTSFYAMPLNGVHVSDFNPVAINKSIGESLYSDDAFSDAQSIAKQCSSTVLIPSGWFRLSADLEIKASTKGLGREESVLIFDDGKAPTNIISANEWNDVKEISGFKIISDKSAYWNQNDAGQSWDASVTDFEKKLEYGQRIAKGNKTTTPNNITGFGDYTQWMQQDGQFPDLSGLPSAARKAGEPTFRMHLRCKIESMGFEGFEKGCVLVGTYQTTMDTCFFKNCNRGLYTTNAAYIGGAGAARITSLAIKGCDFEDCDIAHDGQEFLQSTFTDNVMQACIVGQRLAYAAGSTSSDNYFEIGHSGFYVDTNDDSYGTTFARNFCNTSYSRYNVALLSGISYRCKEPQSGNNKIKMADAVSRCQFDDFYDMTESNGGFFYRNGNQWKPSEPKDYYIKTLGDGTTFTITPVSLQFNMLLDLSPLVTGLRMWANTTSIQNRTKNISFDMLDQLDAVRYYDASGVSNPREDIDVVYFNKIDGTELELNAAGVEHIIKITFV
Physico‐chemical
properties
protein length:694 AA
molecular weight: 76365,76820 Da
isoelectric point:4,79144
aromaticity:0,11527
hydropathy:-0,37464

Domains

Domains [InterPro]
IPR011050
STR
239–519
IPR011050
IPR011050
STR
239–525
IPR011050
QXN60104.1
1 694
Architecture
STR
STR 239-525 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QXN60104.1
1 694
Domain Start End Length (AA) Confidence
N-terminal 1 228 228 0,9718
Central domain 229 568 341 0,9817
C-terminal 569 694 125 0,9375
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-228
Central
229-568
C-terminal
569-694

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage HNL01
[NCBI] 		2853169 No lineage information
Host Aliivibrio fischeri ES114
[NCBI] 		312309 Pseudomonadota > Gammaproteobacteria > Vibrionales > Vibrionaceae > Aliivibrio > Aliivibrio fischeri

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QXN60104.1 [NCBI]
Genbank nucleotide accession
MZ456352.1 [NCBI]
CDS location
range 23503 -> 25587
strand -
CDS
ATGGCAAATTGGCCTAATATTCAAAAACAGTATAAAAATGCACCTTCGGATGAAGTTATTATCCGCCACGGTACAATCAACTACGTACAAGATCGTGAATCTTTTGCAGCATCAATGGCTAATGCTCGTTGGTCTAACGAGGCAAACTATACTGCAGGTAGCGAGATTCAAGGTAGTGATGGTAAGTGGTATGTTGCTGTAGTTAATACAGGCAGTGCTACGAGTAATAGTGTAGATCCTGTCACACGTACAGATGATACAGTTTGGTCGGAGAGTAATAATATTTCCGATTCAGAACTATACGCACATACATCTTACACATGGGGTACCGCTCCTGATGGATCAAATATGGCACCTTCTGGGGTACTGTTCGATTTCGGCTCAGGTAAAGACCGAATTACTGTGTATAACGCAACGAATTTGCCTGTTGCGATGGGGGCTGTACCTAATGAAAGCTTTAAGGCATTTAAAAAGCCCGTGCTGACCACTCCCAACGAAATTTCTTCACTTAATTTCGCATTCGAAGGGCTTGTTTTTTCAACAGGAGTTGGTGACTGGCGAATTGTTTCAACTTCGGGAATTCAAATTACCGGGACAAGTTTTTATGCAATGCCATTAAATGGTGTGCATGTATCAGACTTTAACCCAGTTGCAATCAACAAAAGTATCGGTGAGTCGCTTTACTCAGATGATGCATTTTCTGACGCTCAATCAATTGCTAAACAGTGCTCGTCAACCGTATTGATCCCTTCTGGTTGGTTCAGGCTAAGCGCGGATCTAGAGATTAAAGCCTCGACTAAAGGATTGGGTCGCGAGGAGTCGGTTCTTATTTTTGATGACGGAAAGGCTCCGACAAACATCATCTCCGCAAACGAATGGAACGATGTCAAAGAGATTTCCGGTTTTAAAATAATATCTGACAAGTCGGCATACTGGAACCAAAATGACGCTGGTCAGTCTTGGGATGCTTCAGTTACAGACTTTGAGAAAAAGCTTGAGTATGGACAGAGGATTGCGAAAGGCAACAAAACAACAACTCCAAACAACATAACCGGATTCGGCGATTACACTCAGTGGATGCAACAAGACGGGCAATTCCCAGATCTGTCTGGATTACCTAGTGCCGCAAGAAAAGCTGGTGAGCCAACGTTTAGAATGCATTTGCGATGCAAGATTGAATCAATGGGGTTTGAAGGATTCGAAAAGGGATGCGTTCTAGTCGGAACATATCAAACCACGATGGATACATGCTTCTTTAAAAACTGCAACAGAGGGCTTTACACGACTAACGCGGCTTATATCGGAGGGGCTGGGGCAGCTAGGATAACAAGCTTAGCAATTAAAGGTTGTGACTTTGAGGACTGCGATATCGCGCACGACGGACAAGAGTTTCTACAATCCACTTTTACAGATAACGTAATGCAGGCTTGCATTGTCGGTCAGCGTCTCGCTTATGCCGCAGGAAGCACATCAAGTGATAACTATTTCGAAATCGGTCACAGTGGATTTTACGTTGATACTAACGATGATTCTTACGGAACAACATTTGCCAGAAACTTCTGTAACACTTCATATAGTAGATACAACGTGGCACTGCTTTCTGGCATTAGCTACAGATGCAAAGAGCCACAAAGTGGAAACAACAAGATAAAAATGGCGGATGCTGTCAGTCGGTGTCAATTTGATGATTTCTACGACATGACAGAATCGAACGGTGGCTTTTTCTACAGAAATGGCAATCAGTGGAAGCCATCTGAGCCAAAGGATTACTATATAAAGACGCTGGGTGACGGAACAACTTTCACTATAACACCTGTATCCCTTCAGTTTAATATGCTATTAGACTTGTCGCCTCTAGTTACTGGATTAAGAATGTGGGCTAATACTACCAGCATTCAAAACAGGACAAAGAATATTAGCTTTGACATGCTAGACCAATTAGATGCTGTTAGGTACTACGATGCGTCAGGGGTTTCAAACCCTAGAGAGGATATAGATGTAGTCTACTTCAATAAGATTGATGGCACAGAGTTAGAACTTAACGCAGCAGGAGTTGAGCACATTATAAAAATAACGTTTGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3463ca2e91594e9944beff0200cf2f59ab7f3791b673a5f6b3f74f2e09128523
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5286
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Independent host- and bacterium-based determinants protect a model symbiosis from phage predation Lynch,J.B., Bennett,B.D., Merrill,B.D., Ruby,E.G. and Hryckowian,A.J. 2022 35172163 GenBank