Protein

View in Explore
Genbank accession
ATN48464.1 [GenBank]
Protein name
tail fibers protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MALYRRGTASMDADGTVHGTDTKWKDQLALIRVGATIVFLEQPIKLAVISDIVSDTELKAISTDGQTADDGKYVILLNDSLTVNGLAQNVAETLRYYQSKETEIAEAIDLINQLDMNKLEQIVADVNQAKSDSQAAQNQAELARDAANAARDETNSIKNQTQQIVDGAVGSINAAKDQAITDVQQKENSSITHIDSEEAAAIQAINDAKGDLSGYVNDAQTAAQTATSAKNDAQAARDEAVSSKDAAAVSAQEAKDAANSINAENLLTKDGNLAGLDDKKESRKNIGLGENDAVNFLTINTTGAIGAGRNSWNGSNWGSQSILSSLMIMSPDGISTPGIYVRKEHSDNGYAGALLFYEGANYFETNNRFRANQFLCQKTSMGYNQMWSASCFQGNAYTADSGAENYQSLIAGSCGTRGQGYVGGVAFGMMTTGNPEWPRAQISVGAQDRDGAGNIGLQMHFRFMASGQISYAGPQGAGSFQQIPASDRNIKHSIKDDESSIAYNNIKSMRFRNFIFNDDEQERVRRGVIAQEIEEIDNLYVKRRMYESHELNGPKVERLELDTTPLLLDTMRALQDTIKKVEELQEEIKMLKSK
Physico‐chemical
properties
protein length:594 AA
molecular weight: 64477,59470 Da
isoelectric point:4,78706
aromaticity:0,06061
hydropathy:-0,50370

Domains

Domains [InterPro]
DC_1541
STR
78–513
DC_1541 Coil
Coil
Unmapped
97–117
Coil Coil DC_0247
IPR030392
CHP
486–536
IPR030392
IPR030392
CHP
486–588
IPR030392
ATN48464.1
1 594
Architecture
STR
RBD
STR 78-513 | RBD 514-594
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ATN48464.1
1 594
Domain Start End Length (AA) Confidence
N-terminal 1 280 280 0,9952
Central domain 281 479 200 0,0489
C-terminal 480 594 114 0,9989
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-280
Central
281-479
C-terminal
480-594

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage Sfin-1
[NCBI] 		2024314 Uroviricota > Caudoviricetes > Drexlerviridae > Tunavirus > Tunavirus Sfin1
Host Shigella sp.
[NCBI] 		625 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ATN48464.1 [NCBI]
Genbank nucleotide accession
MF468274.1 [NCBI]
CDS location
range 31097 -> 32881
strand +
CDS
ATGGCTTTATACAGACGCGGTACTGCATCAATGGATGCAGACGGAACGGTTCACGGAACCGATACAAAATGGAAAGATCAGCTTGCTCTTATTCGCGTAGGTGCAACTATCGTGTTCCTTGAGCAACCAATTAAGCTGGCTGTGATTAGCGATATCGTTAGTGATACAGAATTAAAGGCTATCTCTACTGATGGTCAGACTGCCGATGACGGTAAGTATGTGATCCTACTTAATGACTCTCTAACCGTTAACGGATTAGCTCAAAACGTCGCCGAGACTCTGCGATACTATCAAAGCAAAGAGACTGAGATTGCGGAAGCTATAGACCTGATAAATCAGCTTGATATGAATAAACTTGAGCAAATAGTTGCTGATGTGAATCAGGCGAAATCTGATTCTCAAGCTGCGCAAAATCAGGCTGAATTAGCGCGTGACGCAGCCAACGCTGCACGCGATGAAACTAACTCAATCAAGAATCAGACGCAACAGATTGTTGACGGTGCTGTCGGTAGCATCAATGCGGCTAAGGATCAGGCTATAACCGATGTGCAGCAAAAAGAAAATTCATCCATCACTCACATTGACTCAGAAGAAGCGGCGGCGATTCAGGCAATTAATGACGCGAAAGGCGATCTGTCAGGTTACGTTAATGACGCTCAAACGGCAGCACAAACGGCTACCTCTGCAAAAAACGACGCTCAGGCAGCACGTGACGAAGCGGTAAGCTCAAAAGATGCTGCTGCGGTAAGTGCTCAAGAAGCAAAAGACGCAGCTAACAGCATCAATGCTGAAAATCTTTTAACTAAGGATGGCAATCTAGCTGGTCTTGATGATAAAAAAGAGTCAAGAAAAAATATTGGGTTAGGTGAAAATGATGCTGTTAACTTTCTTACTATTAACACCACGGGAGCTATAGGGGCAGGAAGGAACTCATGGAACGGTTCTAATTGGGGTAGTCAGTCCATATTGTCATCATTGATGATTATGTCACCTGATGGAATATCCACACCAGGGATTTACGTCAGAAAAGAACATAGCGATAATGGTTATGCTGGGGCTTTATTATTTTATGAAGGGGCAAACTACTTCGAGACTAACAATAGATTTAGAGCTAATCAGTTTTTATGCCAGAAAACATCTATGGGTTACAACCAGATGTGGTCTGCTTCATGCTTCCAGGGTAATGCTTACACTGCCGATAGTGGCGCTGAAAACTATCAATCACTTATTGCTGGATCGTGTGGTACAAGGGGTCAAGGGTATGTTGGCGGCGTAGCTTTTGGCATGATGACTACGGGCAATCCTGAATGGCCCAGGGCGCAAATATCAGTAGGCGCTCAAGATAGGGATGGGGCAGGCAATATTGGTTTGCAAATGCATTTCAGGTTTATGGCTTCAGGGCAAATATCTTACGCTGGACCGCAAGGGGCTGGAAGTTTCCAACAGATTCCGGCATCTGACAGAAATATAAAGCACAGCATAAAGGATGATGAATCAAGCATTGCATACAACAACATAAAATCAATGAGATTTAGGAACTTTATCTTTAACGATGATGAGCAAGAAAGGGTAAGGCGAGGTGTTATAGCTCAGGAGATAGAAGAGATCGACAATCTATATGTTAAGAGAAGGATGTATGAGAGCCACGAGCTAAACGGGCCAAAAGTTGAAAGGCTTGAGCTTGATACAACTCCTTTATTGCTTGACACTATGAGAGCTTTACAGGATACAATAAAGAAAGTTGAAGAGTTACAAGAAGAGATAAAAATGTTGAAGTCCAAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
c6f13b8b69db8bd93d8fe7f9df999f8cd9ad60c53895cb9a1cae06e10b435160
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6824
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A novel bacteriophage with broad spectrum lytic activity against Shigella sp. and E.coliC Tousif,A.S.K. and Nabanita,G. 2023-11-29 — GenBank