Protein

View in Explore
Genbank accession
YP_010746944.1 [GenBank]
Protein name
putative tail fiber protein
RBP type
TSP
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,77
Protein sequence
MALVIHYTRNEDGTFDVKRYRDNPMNFVVNHVPDGVPVRVFIGEIGEDNDVTEDFEALKENATFHIVESAGGGAIKGVMKIFSVILKPLAKLLSPSVKGASSNLANSQADSPNNSLTDRNNKARPYERSYDICGTVQTIPNNLMSTYKVFNAAGKIVEYGYYDAGRGYLDIHPEGITDGDTRVSDITGTSVAVYAPYTSPNNTSTPQVMVGDPIEQGLYITVESNEVDGVVLKAPNGLGISFSYMSGYPSLSGNIGTIYDPTGGSDFSGVLVPSDTFSLVSAWTNTDVDLSGGGYQVVSVSEGTVTFIVPGGLIGRWQEIRPGSFFRGDGEASLQPDNTYEKTLTDWVSINRTEVERIVANIAAANGMYKDNGKSKTLASVTAEIQYQLLDENSTPYGPIYTAQGTVSGRTPDYNGVTIYADLPVVSRVRVRARRVTDLDFNFEGSVVDEITYVNLYGQTRDNTPHYGNRTTVHSMRKQTPRAAEVKQPQLRMIATEMVYKYLGNGVFEDTMTPNTQAVQSLIRLARDPDVGGLNLTVRNMDKLLAVQNEVEAYFGDKQAGEFCYTFDDYKTTMQDIVSTIADAIFCTPYRRGADILLDFERPRMGPEMVFTHRSKAGTSEKWTRTFNDSQVFDSLKFSYIDPKTNVKETITIPETGGVKTETYDSKGIRNYKQAFWAANRRHQKNILKKISVSFTATEEGIFALPNRAISVVKGSRMATYDGYVTAVNGLTVELSQPVKFTSGDDHSLILKLRDGGVQSVNVVPGAHDRQVIMTSVPQEAIYTGNSALKTEFSFGNEARHNAQMILVSTVDPGDDRTVKITGFNYDKDFYKFDNVPPFGRAFSNGFDNGFN
Physico‐chemical
properties
protein length:852 AA
molecular weight: 93755,69750 Da
isoelectric point:5,27013
aromaticity:0,09742
hydropathy:-0,36150

Domains

Domains [InterPro]
DC_0118
STR
1–686
DC_0118 DC_0808
NF040662
Unmapped
352–832
NF040662
YP_010746944.1
1 852
Architecture
STR
RBD
STR 1-686 | RBD 703-846 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010746944.1
1 852
Domain Start End Length (AA) Confidence
N-terminal 1 230 230 0,9631
Central domain 231 429 200 0,6341
C-terminal 430 852 422 0,1622
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-230
Central
231-429
C-terminal
430-852

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage JD01
[NCBI] 		2831178 Uroviricota > Caudoviricetes > Sarkviridae > Jerseyvirus > Jerseyvirus JD01
Host Salmonella enteritidis
[NCBI] 		149539 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010746944.1 [NCBI]
Genbank nucleotide accession
NC_073189 [NCBI]
CDS location
range 34622 -> 37180
strand -
CDS
TTGGCGCTAGTAATCCACTACACACGAAACGAAGACGGCACGTTTGATGTCAAGCGCTACCGCGATAATCCGATGAACTTCGTCGTGAACCATGTTCCGGACGGGGTGCCGGTGCGTGTTTTCATTGGCGAAATCGGAGAAGATAACGACGTAACAGAAGACTTCGAAGCACTGAAAGAAAACGCGACTTTCCACATTGTGGAATCTGCCGGTGGTGGCGCTATTAAAGGCGTCATGAAGATTTTTAGCGTTATCCTTAAACCGCTGGCGAAACTATTATCGCCGTCCGTGAAAGGTGCGTCCTCGAACCTTGCGAACTCGCAGGCGGATTCCCCAAACAACAGTCTTACTGACCGTAACAACAAGGCGCGCCCATACGAGCGCAGCTACGACATCTGCGGAACGGTGCAAACTATCCCAAATAACCTTATGTCTACTTATAAGGTGTTTAACGCCGCTGGTAAAATTGTAGAGTACGGCTATTACGACGCCGGGCGTGGTTACCTAGACATACACCCTGAAGGTATAACTGACGGGGACACCCGCGTATCAGACATAACAGGCACGTCGGTTGCCGTGTACGCGCCGTATACGTCACCAAATAATACATCTACACCGCAGGTCATGGTTGGGGACCCCATAGAGCAAGGCCTGTACATTACCGTAGAATCTAACGAAGTTGACGGCGTGGTTTTGAAAGCGCCCAACGGTCTTGGCATTTCTTTCTCTTACATGTCTGGGTATCCGTCTTTGTCAGGAAACATTGGCACTATATACGACCCTACAGGCGGCTCGGATTTTTCTGGAGTACTGGTGCCTAGTGACACGTTTTCGCTGGTGTCCGCGTGGACAAATACAGACGTTGATCTGTCCGGCGGCGGGTATCAGGTAGTCAGCGTGTCCGAAGGGACCGTTACCTTTATAGTACCCGGTGGTCTCATTGGTAGGTGGCAAGAAATAAGACCCGGTTCGTTTTTCCGCGGTGACGGAGAGGCCTCGCTGCAACCGGATAACACATACGAGAAAACCTTAACCGATTGGGTGTCAATAAACCGTACCGAGGTTGAGCGCATCGTGGCCAATATCGCCGCCGCCAATGGTATGTATAAAGACAACGGCAAATCTAAAACACTAGCGTCGGTTACCGCGGAGATACAGTACCAGCTGCTTGATGAAAATAGCACCCCTTATGGGCCGATATACACTGCACAAGGAACCGTGTCCGGGCGAACCCCAGACTACAACGGTGTCACTATTTACGCCGACCTGCCGGTTGTGTCGCGGGTGCGGGTGCGCGCCAGAAGGGTGACAGACCTCGACTTTAATTTCGAAGGCTCAGTGGTAGACGAAATAACCTACGTTAACCTGTACGGCCAGACCCGCGACAACACCCCGCACTACGGCAACCGAACCACTGTGCACTCAATGCGTAAGCAGACACCACGGGCTGCCGAAGTTAAGCAACCGCAGTTGCGCATGATTGCTACTGAAATGGTGTACAAATACCTCGGTAATGGTGTTTTTGAAGACACGATGACCCCCAATACGCAAGCCGTGCAATCTCTTATCCGCCTGGCGCGTGATCCGGATGTGGGGGGTTTAAACCTGACGGTACGCAACATGGATAAGTTACTTGCTGTGCAGAACGAGGTCGAAGCGTATTTTGGCGACAAACAGGCTGGAGAATTTTGTTACACGTTTGATGACTATAAAACCACCATGCAGGACATAGTTAGTACTATAGCAGACGCCATATTCTGCACCCCATATCGGCGTGGGGCGGATATCCTTCTCGATTTTGAGCGCCCCCGCATGGGTCCTGAGATGGTGTTCACCCACCGAAGCAAGGCCGGTACTTCTGAAAAGTGGACCAGAACATTTAACGATTCTCAGGTGTTCGATAGTCTTAAATTCTCGTACATAGACCCAAAAACAAACGTTAAAGAAACAATAACAATACCTGAAACTGGCGGGGTTAAAACGGAGACCTACGATTCAAAAGGTATTCGCAACTATAAGCAGGCTTTCTGGGCAGCAAACCGTCGTCATCAGAAAAACATTTTAAAGAAAATTTCAGTGTCGTTTACCGCCACGGAAGAGGGTATCTTTGCTTTACCAAATCGTGCCATTAGTGTGGTTAAGGGTTCACGTATGGCGACCTACGACGGCTACGTAACCGCGGTAAACGGGCTCACCGTAGAACTGTCACAACCAGTTAAGTTCACCTCGGGAGATGACCATTCTTTGATTCTCAAGTTACGTGACGGCGGCGTGCAAAGTGTTAATGTTGTCCCTGGCGCACATGACCGACAAGTAATTATGACGTCTGTGCCGCAAGAAGCCATTTACACTGGTAATAGCGCTTTGAAAACTGAATTTTCATTCGGCAACGAAGCAAGGCATAATGCTCAGATGATTCTTGTTTCTACGGTAGACCCTGGCGATGACAGAACAGTCAAAATAACCGGGTTTAACTATGACAAGGATTTCTATAAGTTTGACAACGTGCCTCCTTTCGGTCGTGCGTTCTCCAACGGATTCGATAACGGTTTTAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
95d26ac34ac1049df8c4382ee4e417ef0155e3e9e060c96c5d34d67f91167e13
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3075
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and complete genome analysis of a novel phage JD01 infecting Salmonella enteritidis Li,Z., Zhao,C., Jiang,J. and Xu,C. 2018-11-01 — GenBank