Protein

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Genbank accession
YP_009840502.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MENSKYVYFVDFEKFGIKSDGTDAAATTSGWIAALKEAVDLGYPKVYVPAGLYLIDAVGKTDSLPEYGGGLRFPSNIEVIFHEMALFKVEPNSSTGYACFNLENVENVTLRGGYVIGDRYEHDYTLDGVPNNRRTHEWGHCLHIRGCRNIYVENMTLMNATGDNIWVPAKGMMNWEGSTYIPSEGITIHKCTTIRGRRNNFATNGCIGLNIDDCDFIEAGGDVIGPAFGIDLEGFAENSIKYDHPYEINITNCRFKRNGKGALNINVTGKVHATNNFTDDVISYGFSTDGTISNNTITNETGVHKPFGIDSIRKSSSETGNRTIITGNQIRGFASGICARGVGVIVSNNYLSDISSVGIYPYLSEEVLVSNNIINSDCLHVWVRESKDVKVNNTKGKGAANNYGIKVEASHDVVLNDNEHEAKGGIQIARSTNVRVKDNDLNLIGNGNGISWDKTSQVKILDGNWINGAVAIAISGYGEVYPTNIMRNTIEDCKYLIGIYLNGGSQHVIKDNDIMFRRGSNGGYGVQLKDTTDVRVYRNDVRTMDGGTLYSSFDSSGALSTKYVGNTMDAGGINKNDTDYVDSSNVVFPKQA
Physico‐chemical
properties
protein length:592 AA
molecular weight: 64707,39210 Da
isoelectric point:5,45946
aromaticity:0,09122
hydropathy:-0,33986

Domains

Domains [InterPro]
IPR012334
STR
13–378
IPR012334 IPR011050
IPR011050
STR
33–375
IPR011050 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626
IPR006626
Unmapped
105–146
IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR012334
IPR039448
ENZ
290–440
IPR039448
DC_0453
RBD
356–586
DC_0453
YP_009840502.1
1 592
Architecture
STR
STR 13-587 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009840502.1
1 592
Domain Start End Length (AA) Confidence
N-terminal 1 22 22 0,8806
Central domain 23 581 560 0,9971
C-terminal 582 592 10 0,2961
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-22
Central
23-581
C-terminal
582-592

Taxonomy

  Name Taxonomy ID Lineage
Phage Bacillus phage BSP38
[NCBI] 		2283013 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Bacillus subtilis
[NCBI] 		1423 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009840502.1 [NCBI]
Genbank nucleotide accession
NC_048726.1 [NCBI]
CDS location
range 12441 -> 14219
strand -
CDS
TTGGAAAATAGCAAGTATGTTTATTTTGTAGACTTTGAAAAGTTCGGTATTAAATCAGACGGGACGGACGCTGCTGCCACAACCAGCGGGTGGATCGCAGCACTAAAGGAAGCTGTAGATTTAGGTTACCCAAAAGTATACGTTCCAGCCGGGTTATATCTAATTGACGCTGTAGGGAAGACAGACTCCCTACCGGAGTACGGTGGAGGTTTACGATTCCCGTCTAATATCGAAGTTATCTTTCACGAGATGGCTCTCTTTAAAGTCGAACCTAACAGCTCTACCGGGTACGCCTGCTTCAACCTTGAGAACGTGGAGAACGTTACACTGAGAGGCGGGTACGTGATTGGAGATCGTTACGAACATGATTACACTTTAGACGGTGTTCCAAATAATCGAAGAACCCACGAATGGGGTCACTGTCTCCATATCAGAGGCTGCCGCAACATCTATGTAGAAAATATGACACTTATGAATGCCACAGGAGATAACATCTGGGTACCTGCAAAAGGGATGATGAACTGGGAAGGAAGTACGTATATCCCTTCTGAAGGTATTACGATCCATAAGTGTACAACAATTAGAGGGCGGCGTAACAACTTTGCTACAAATGGCTGCATAGGTCTTAATATTGATGACTGTGACTTCATTGAAGCAGGTGGAGATGTAATTGGACCAGCCTTCGGTATTGACCTCGAAGGATTTGCTGAGAATAGTATCAAATATGATCACCCCTACGAGATTAACATAACTAACTGCCGTTTTAAACGTAATGGTAAAGGCGCCCTTAATATTAACGTTACAGGTAAAGTACACGCTACGAACAACTTTACTGACGATGTAATTAGTTACGGGTTCTCAACCGATGGTACGATCAGCAATAACACAATTACAAACGAGACTGGTGTACATAAACCGTTTGGTATTGACTCTATTCGTAAGTCCTCGTCTGAGACAGGTAACAGAACAATTATTACCGGGAACCAGATCAGAGGGTTTGCATCAGGTATATGCGCCCGAGGTGTAGGGGTTATAGTGAGTAACAACTACCTATCTGATATTAGTTCTGTAGGTATTTACCCTTACCTCTCTGAGGAGGTCCTCGTATCCAATAACATCATTAACAGCGATTGCTTACATGTCTGGGTACGAGAGTCTAAAGATGTCAAAGTAAACAATACGAAGGGTAAAGGCGCAGCTAATAACTATGGAATTAAAGTAGAGGCTTCTCATGATGTTGTCTTAAATGATAATGAGCACGAAGCAAAGGGCGGAATCCAGATTGCCCGATCTACGAATGTCCGGGTTAAAGACAACGATTTAAACCTTATTGGCAACGGTAACGGTATTAGTTGGGACAAGACCTCTCAAGTTAAGATACTAGACGGTAACTGGATCAACGGAGCAGTAGCGATAGCCATCTCAGGGTACGGGGAAGTGTACCCAACTAACATCATGAGAAACACAATAGAGGACTGTAAGTATTTAATCGGTATTTACTTAAACGGCGGCTCTCAGCATGTGATTAAAGACAACGACATTATGTTCCGCAGAGGCAGTAATGGAGGGTACGGGGTGCAGCTCAAGGACACTACTGATGTCCGAGTGTACCGGAATGATGTTCGTACTATGGACGGAGGTACTCTTTACTCTTCATTCGATTCTTCAGGCGCCCTGTCCACCAAGTATGTAGGTAACACCATGGATGCTGGAGGTATTAACAAGAACGATACTGACTATGTAGATAGCAGTAATGTAGTATTCCCTAAACAAGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5b5d6a82f29c646f72676e29a1e6188771ff20aa593d9bfc85516f0af7e61774
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8875
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete nucleotide sequence of Bacillus phage BSP38 Ghosh,K. and Kim,K.-P. 2018-12-01 — GenBank