Protein

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UniProt accession
Q1RND8 [UniProt]
Protein name
Putative receptor binding protein
RBP type
TSP
Evidence RBPdetect
Probability 0,78
Protein sequence
MTIKNFTFFSPNSSEFPVGSNNDAKLYMMLSGMDYTTFRRTDWSSPVNTALNIQYVNTSFIVAGRYFELINETVALKADSLNYIHINIDLTKTTAPVSVSCETADNSNTIDLNNASGVYKRVVDIITTNGLGVTNRVTPTQKITVGDLTSNSLRTGDLEFTGNLKTPAKRILASGASLLLDGDVVNVSKNISDCANGWILHFTEFKSRMNGNTKNSLNQWFFIPKESVQLADVGHSFALANSTGGVVTKFAYLQGNQITGHGVNNNTSSKQFALQHVLEY
Physico‐chemical
properties
protein length:280 AA
molecular weight: 30649,05920 Da
isoelectric point:6,96058
aromaticity:0,09286
hydropathy:-0,16750

Domains

Domains [InterPro]
G3DSA:2.60.520.10
STR
1–140
G3DSA:2.60.520.10
SSF141658
STR
2–139
SSF141658
IPR048780
RBD
2–135
IPR048780
DC_1167
STR
2–280
DC_1167
Q1RND8
1 280
Architecture
STR
STR 1-280
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
Q1RND8
1 280
Domain Start End Length (AA) Confidence
N-terminal 1 153 153 0,9363
Central domain 154 269 117 0,0122
C-terminal 270 280 10 0,9969
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-153
Central
154-269
C-terminal
270-280

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactococcus phage Q62
[NCBI] 		287424 Uroviricota > Caudoviricetes > Skunavirus >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AAT81497.1 [NCBI]
Genbank nucleotide accession
AY576297 [NCBI]
CDS location
range 1 -> 843
strand +
CDS
ATGACAATTAAAAACTTTACATTCTTTAGTCCAAATAGTTCAGAGTTTCCAGTAGGTTCAAATAATGACGCTAAACTCTACATGATGTTATCAGGAATGGACTACACAACGTTCAGACGTACTGACTGGAGTTCTCCTGTTAATACAGCCTTAAACATTCAATATGTTAATACTTCTTTCATTGTGGCTGGTCGTTACTTTGAATTGATTAATGAGACCGTAGCCCTTAAGGCTGACTCGTTAAACTATATTCACATTAATATCGATTTGACGAAAACGACAGCACCGGTTAGCGTATCTTGCGAAACAGCAGATAACAGTAATACAATTGACTTGAACAATGCTTCTGGGGTTTATAAACGTGTTGTAGACATCATTACAACTAATGGTTTAGGAGTGACGAACCGTGTAACACCTACTCAAAAAATAACCGTAGGAGATTTAACTTCTAACAGTCTTAGAACAGGTGATTTAGAATTTACTGGAAACTTAAAAACTCCAGCAAAAAGAATTCTTGCTTCTGGTGCTTCGTTGTTACTTGACGGAGACGTTGTCAATGTTTCTAAAAATATATCAGACTGCGCTAATGGTTGGATTCTTCACTTCACAGAGTTTAAATCACGTATGAACGGAAATACAAAAAACTCACTTAATCAGTGGTTCTTTATTCCTAAAGAATCAGTACAGTTAGCTGATGTAGGACATTCTTTCGCTCTTGCTAATTCTACCGGCGGTGTTGTAACTAAATTTGCATATTTGCAAGGTAATCAAATCACAGGTCATGGGGTAAACAATAACACATCTTCAAAACAATTCGCATTACAGCACGTATTGGAATATTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
464dbac774dbd565c888d373f72be3d3e25e12cc3128fe2ce554acafce779b18
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7486
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50