Protein

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Genbank accession
YP_398994.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MAIYDLGSASLAANGEVTGVGTTWKAPLTLIRVGATIVFKTEPVKIYTISEIISDTQINVYNPNSETVPAGTGYAILAHDGITVQGLAQDVAETLRYYQSRETEVADAVDVFNNFDFNDFESKVTQVNNQYGDVVNMSSQVAQNAAQVAGDMASAAASAGLAMSSEQAARGYAESLSGALISSFESGGVIESRNQQMIWLDSGKPKSYVWMGDLPKTVPENSTPYSSGGIGDSSWSELGSKGYVSFYDFGCVGDGITNDISGINRAINYAKSKNLKIKQNDGVFLVSGSDYIDIGSLSADFTGSVIKPSSSWTGQITITNGEPTTYDASSSVVSSFNSMSNESRTAGSNLFDSISENRDLDGCFIVFYTNQDMYTYRDSVQKRIELNRVYNRGYLENSLKYDLGNNVTSVRALKINKTTQEIKGLTIDESLSTRYQIVYVNNSTRLSIKDISFINKPITQGFSDTRLAIANSYDITVDGLFAESVADARDSSGELYSYALSIGESMNVRIMNARVNGKGWGANGSNNCANVTFENCDLSRIDFHMPFHNYLKIENCNIGARGVVVTGLGDLHIRDSAFNASRYTNGNIITTRADAGGFFDGNLYMDNITFTGTRSTGLTGTGLINGISYEGNGPVAGSPIKSTLFNSVRIKGLNFKSGSYSSHPGNLFYSSRDGALLFPSDVSISDVNMSAFPSSASLGLTIDFSRFKGPFSDMTNSESSLTGRFTTNISIKGILSNNIVFMGANSLHNPNVSIYDLSSPVGSSRYPIFETNQRGSYYMVNCNVERLRAYYGSDPNGPVAIKFVGGIVKSTSDTASPVDGSVNHDISFINTRFVCNFNGQSQSTLPITTGISRRALLSSCDFFDISGVRLNGLNIPVSESTSVTVGFGFRLNQDLVVTTGFSGSNTFTANKISVISDSPQRFATRSSSTGAISFALSGTLVSSTTISTTSGNELRSVKLI
Physico‐chemical
properties
protein length:960 AA
molecular weight: 103040,14730 Da
isoelectric point:5,17334
aromaticity:0,09479
hydropathy:-0,16302

Domains

Domains [InterPro]
DC_1200
STR
1–465
DC_1200 DC_1183
G3DSA:2.10.10.80
ATT
179–244
G3DSA:2.10.10.80 IPR012334
IPR040775
RBD
182–239
IPR040775 IPR011050
YP_398994.1
1 960
Architecture
STR
ATT
STR
RBD
STR 1-178 | ATT 179-244 | STR 245-672 | RBD 673-959 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_398994.1
1 960
Domain Start End Length (AA) Confidence
N-terminal 1 258 258 0,9936
Central domain 259 892 635 0,9816
C-terminal 893 960 67 0,9140
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-258
Central
259-892
C-terminal
893-960

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage Rtp
[NCBI] 		2994041 Uroviricota > Caudoviricetes > Drexlerviridae > Rtpvirus > Rtpvirus Rtp
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_398994.1 [NCBI]
Genbank nucleotide accession
NC_007603 [NCBI]
CDS location
range 30856 -> 33738
strand -
CDS
ATGGCAATTTATGACTTGGGATCCGCATCATTAGCTGCAAACGGCGAGGTGACTGGTGTCGGGACAACATGGAAAGCACCGCTTACACTGATTCGCGTAGGTGCCACCATTGTATTTAAAACTGAGCCAGTAAAAATTTACACCATCTCTGAGATCATCAGCGATACGCAGATTAATGTTTATAACCCTAATTCTGAAACTGTTCCTGCTGGAACTGGTTACGCTATTCTTGCTCATGATGGGATTACCGTTCAGGGATTAGCTCAAGATGTTGCTGAGACTCTTCGTTACTATCAGTCACGTGAAACTGAGGTTGCTGATGCAGTTGATGTATTTAACAACTTTGACTTTAATGATTTTGAATCTAAAGTAACACAGGTTAACAATCAGTATGGCGATGTTGTAAACATGTCATCACAGGTTGCGCAGAATGCTGCCCAGGTAGCAGGTGATATGGCTTCTGCTGCAGCGAGTGCTGGATTAGCAATGTCATCAGAACAAGCTGCACGGGGTTATGCGGAATCATTATCTGGTGCCTTAATTTCATCATTTGAGTCCGGAGGTGTAATAGAGTCAAGAAATCAACAAATGATATGGCTTGACTCCGGTAAGCCAAAGTCATACGTATGGATGGGAGATCTACCTAAGACAGTCCCGGAAAACTCGACACCATATTCTTCTGGTGGGATTGGTGATTCTTCGTGGTCTGAGCTAGGATCTAAAGGTTATGTTAGTTTCTATGATTTTGGGTGTGTTGGAGATGGTATTACTAATGATATTTCAGGTATAAATCGAGCGATAAACTACGCAAAATCCAAAAATCTAAAGATAAAGCAGAATGATGGTGTTTTTCTTGTTTCTGGTTCCGATTATATTGATATTGGTTCATTGAGTGCTGATTTTACAGGCTCTGTTATAAAACCATCATCCTCATGGACCGGGCAGATAACTATAACCAACGGGGAACCTACAACTTATGACGCTTCGTCATCTGTTGTTTCATCTTTTAACTCCATGTCTAATGAATCAAGAACTGCTGGAAGTAATTTGTTCGACTCTATATCTGAAAATCGTGACCTTGATGGTTGTTTTATTGTTTTTTATACAAATCAGGACATGTACACATATAGGGATTCTGTTCAGAAAAGAATTGAACTCAATAGGGTTTACAATAGGGGTTATCTGGAGAACTCACTGAAGTATGATCTTGGAAATAATGTTACATCAGTTAGAGCCTTGAAGATAAACAAGACAACTCAGGAAATCAAGGGTTTAACTATAGATGAAAGTCTTTCGACACGGTATCAGATAGTTTATGTTAATAATTCTACAAGGTTGTCAATAAAAGATATTTCTTTTATTAACAAGCCGATAACACAAGGGTTTAGCGATACAAGGTTGGCAATAGCTAACTCATATGATATCACAGTTGATGGTCTTTTTGCCGAGTCTGTTGCAGACGCAAGAGATTCTTCTGGTGAGCTTTACTCATACGCCTTATCAATAGGTGAATCAATGAACGTAAGGATTATGAACGCAAGGGTTAACGGTAAAGGATGGGGCGCAAATGGTAGTAACAACTGCGCAAACGTAACTTTTGAAAATTGTGATCTAAGTAGAATTGACTTTCACATGCCTTTCCATAACTACCTTAAGATTGAAAACTGCAATATCGGTGCCCGTGGTGTTGTTGTTACTGGTCTTGGCGATTTGCATATAAGGGATAGTGCATTTAATGCGTCTAGATATACGAATGGGAATATCATAACAACAAGGGCAGACGCTGGAGGTTTCTTTGACGGAAACCTTTACATGGATAACATTACTTTTACAGGCACAAGAAGTACTGGCCTGACCGGGACGGGTTTGATAAATGGAATTTCTTATGAAGGAAATGGACCTGTAGCTGGCTCACCAATAAAGAGCACTCTGTTTAACTCAGTTAGGATTAAGGGCCTTAACTTCAAGTCAGGAAGCTACAGTTCTCATCCTGGTAATTTATTCTACTCAAGTAGAGATGGTGCGCTGCTTTTCCCTTCTGACGTTTCAATATCAGATGTTAACATGTCGGCTTTCCCATCATCTGCTAGCTTGGGGCTTACTATTGATTTTTCAAGGTTTAAGGGGCCATTCTCGGACATGACAAATTCTGAAAGCTCATTGACTGGAAGGTTTACTACCAACATAAGTATAAAGGGGATTTTATCAAATAATATCGTTTTCATGGGTGCTAACAGTCTTCATAACCCTAACGTTTCTATATATGATCTCTCTTCACCTGTCGGAAGCTCGAGATACCCTATATTTGAGACAAACCAGAGGGGGAGCTATTACATGGTTAATTGTAATGTTGAAAGGCTTAGAGCTTACTATGGTTCAGACCCAAATGGACCTGTGGCAATAAAATTTGTTGGCGGTATTGTTAAGTCAACATCTGATACGGCCTCTCCGGTTGATGGCTCTGTTAATCATGATATTAGTTTCATTAACACAAGATTTGTATGTAACTTCAATGGACAGTCTCAGAGTACGCTACCAATAACAACAGGCATTTCAAGAAGGGCGCTTCTTTCTTCTTGTGATTTCTTTGATATCTCAGGTGTGCGGCTAAATGGGCTTAACATTCCTGTGAGCGAGTCAACCTCTGTTACTGTTGGATTTGGATTTAGACTCAATCAGGATTTGGTTGTAACTACTGGTTTTTCTGGCTCTAATACTTTTACAGCAAATAAGATAAGTGTTATAAGCGATTCACCTCAAAGGTTTGCTACTAGATCCTCATCGACTGGAGCTATTTCGTTTGCATTGTCTGGGACGTTAGTTAGTTCAACAACAATATCTACAACTTCTGGTAATGAGTTAAGATCTGTTAAATTGATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3cfc8c33e2c00eeeb8802217f773524746a9d996aa8dd1cb5f770186c82f0223
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7259
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50