Protein

View in Explore
Genbank accession
QXV85240.1 [GenBank]
Protein name
receptor-binding tail tip protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MGFFAGKFSDGKTVLSLTNNNGGDTNEHYSPGGNTIFHSDMPFVLVDGTYEAALGNAGNGYFVCAMPSDIINMKSNDPGRVILTAIEINGTHRGFLNGTQSQVGQYLTFAEEPSRAFAAVGLSSAFAIGDSLASGTYIYNSLIGHEESIARQGTGGTLIQGSDFGIVRPGGFVPAGEAIAGAYDLLGFPKGSSTVPLDGGNAKYWDPNWYNPIGSAGRGHNHFYVCSSNIRSYIGKKREVPANTNVFYNPSTLVYACRGSASNMASQSVNTVYVQDWYNITPTKVIWYVLNLRYSNGNMGVSGTPFTGSDILISPSNFTIKGVSLPNTGYKFINQNAFGNLGYRPDMEYVGNNAAYTGVFGDTTARCEFIGSNNGSLWSPVNYGGAASQISIYKFNAGKQWYVDTNTNSIGNEHGAVWSPSTVPLRLFPNNVASTYVGDDITPSYPGTGDYYLPLSTVWLGLPNAHSTIILTTEVIMGNINTAGQPIRTYGGSAWQVQGRRQQSYTAGDGVFHQILTLPPGYLVPYHGTSSYSYWQLWGSRPDMEFRRNGYIYTVKNLGNGNVEFGVIIHAGSQAAIFLPRLRVTAQRLT
Physico‐chemical
properties
protein length:590 AA
molecular weight: 63614,09340 Da
isoelectric point:6,82877
aromaticity:0,12542
hydropathy:-0,20051

Domains

Domains [InterPro]
IPR059609
RBD
1–590
IPR059609
QXV85240.1
1 590
Architecture
RBD
RBD 1-590
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QXV85240.1
1 590
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,2003
Central domain 11 247 238 0,9251
C-terminal 248 590 342 0,6015
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-247
C-terminal
248-590

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage TrudiGerster
[NCBI] 		2851991 Uroviricota > Caudoviricetes > Demerecviridae > Epseptimavirus > Epseptimavirus trudigerster
Host Escherichia coli K-12
[NCBI] 		83333 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Escherichia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QXV85240.1 [NCBI]
Genbank nucleotide accession
MZ501108 [NCBI]
CDS location
range 112396 -> 114168
strand +
CDS
ATGGGTTTTTTCGCAGGAAAGTTTAGTGATGGTAAAACAGTATTATCACTAACAAACAATAATGGTGGAGACACCAATGAACATTACAGTCCTGGTGGTAATACAATATTTCACTCTGATATGCCCTTCGTTCTAGTAGACGGGACATATGAGGCTGCTCTAGGTAACGCCGGTAATGGGTATTTTGTTTGTGCGATGCCTTCTGATATCATTAATATGAAGTCTAATGATCCTGGTAGAGTAATCCTTACTGCTATTGAGATTAATGGTACGCATAGGGGGTTCCTCAATGGTACACAATCGCAAGTAGGTCAGTATCTTACTTTTGCAGAAGAGCCATCACGCGCATTTGCTGCTGTTGGATTAAGTTCAGCTTTTGCTATTGGGGATAGTTTGGCTAGTGGTACATATATATACAATAGTTTAATAGGTCATGAAGAATCTATAGCGCGTCAAGGTACTGGTGGTACACTAATTCAGGGTTCTGATTTTGGTATAGTAAGGCCAGGTGGATTTGTACCTGCAGGTGAAGCTATTGCAGGGGCTTATGATTTACTAGGCTTCCCCAAAGGGTCTAGTACTGTACCTTTGGATGGTGGAAATGCTAAATACTGGGATCCGAACTGGTATAACCCTATTGGGTCTGCTGGTAGGGGGCATAATCATTTTTATGTGTGTAGCTCTAACATTCGTAGCTACATCGGAAAGAAAAGAGAAGTTCCTGCGAATACTAACGTATTCTATAACCCTAGTACTCTAGTTTACGCATGTAGGGGATCCGCTAGTAACATGGCTAGTCAGTCTGTTAACACCGTTTATGTTCAGGATTGGTATAATATTACTCCGACCAAAGTTATTTGGTATGTACTGAATCTACGTTATTCAAATGGTAATATGGGAGTTTCTGGAACTCCCTTTACTGGTTCTGATATACTTATTTCCCCCTCTAATTTTACTATTAAAGGTGTTAGTCTCCCTAACACAGGATATAAGTTCATTAACCAGAATGCTTTTGGGAACTTGGGTTATCGTCCTGACATGGAGTACGTGGGTAATAATGCTGCGTATACTGGAGTTTTTGGCGATACAACCGCTAGATGTGAGTTCATTGGCTCTAATAATGGTAGTCTATGGTCCCCTGTAAACTACGGAGGTGCTGCCTCCCAGATTAGTATATACAAGTTTAATGCGGGTAAACAGTGGTACGTAGATACTAATACTAACTCTATTGGCAACGAACATGGGGCTGTGTGGAGTCCAAGTACAGTTCCTCTCAGATTATTTCCAAATAACGTGGCTAGTACGTATGTTGGGGATGATATTACTCCTTCGTACCCAGGTACTGGAGATTACTATCTTCCTCTATCAACTGTTTGGTTGGGGCTACCTAATGCCCATTCTACTATCATCCTAACTACTGAAGTTATTATGGGTAATATTAATACTGCCGGACAACCAATACGTACGTATGGTGGTAGTGCTTGGCAGGTACAGGGTAGGCGTCAACAGAGCTATACTGCGGGTGATGGAGTATTCCACCAAATATTGACTTTGCCACCTGGTTACTTAGTACCTTATCATGGAACTTCTTCTTATAGCTATTGGCAATTATGGGGTAGTAGACCAGATATGGAATTCCGTAGAAACGGATATATCTACACAGTAAAGAACCTGGGTAATGGTAATGTCGAGTTCGGTGTAATTATACATGCTGGATCTCAGGCTGCTATATTCCTACCAAGACTACGTGTAACTGCACAGCGCCTGACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
67cd3eb3d3e0a24d3620fc02f0608d856670e505acaa4907a1b589685f1f26dc
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2581
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Systematic exploration of Escherichia coli phage-host interactions with the BASEL phage collection Maffei,E., Shaidullina,A., Burkolter,M., Heyer,Y., Estermann,F., Druelle,V., Sauer,P., Willi,L., Michaelis,S., Hilbi,H., Thaler,D.S. and Harms,A. 2021 — GenBank