Protein

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Genbank accession
YP_009790180.1 [GenBank]
Protein name
receptor binding tail protein
RBP type
TSP
Evidence DepoScope
Probability 0,96
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MGFFAGKYSDGKTVLSLNTESGGDINRHYSPNNNSIFHSDMPFVLVDGTYEAGLGDAGNGFFVCQMPSDIINIKSNDPGRVILTAIEINGTHRAFLNGTQSKVGQTIVATQADPFRSFASVSQTSGFAFGNSLASGTYNYNPSLGHEESISRNGTGGTTLHSTYHGIVRPGAGAPVGITVAQAFEQLGFPTNSSTVPVDGNNPYYWDPGWMSPLGAAHRGHDWFYVCNSNIRGYGGVRQGLPGNVNTMYHDGGNRFVCRGSTTNLANQSGDSTILQDWYNITPTKVIWYVLNLRYSNGGMSISGNPFTGSDILISPSNFIIKGVSLPNTGYKFINQNAFGNLGYRPDMEYIGNNAAYTGAFGDTTARCELVGSSNGGLWSPVDYGGAKSQISIYKFGAGKQWYVNSNDNTIGNEHGVVWGPSAVPLRLFGGNVGSSYMGDDITPHYPGTGDRYVGLSTIGLGIPGGNATVILTTEVISGNLNCAGVPANTWNNGVFQVQGRRAYSYSGGDAIFHQILTLPVGYLVPFHTTSAFRYTPNNALSRNSFIYTVKNLGNGNVELGVVMHVSLGSAVFLPRLRVTVQRLT
Physico‐chemical
properties
protein length:585 AA
molecular weight: 62480,75300 Da
isoelectric point:7,22920
aromaticity:0,11282
hydropathy:-0,18991

Domains

Domains [InterPro]
IPR059609
RBD
1–585
IPR059609
YP_009790180.1
1 585
Architecture
RBD
RBD 1-585
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009790180.1
1 585
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,1720
Central domain 11 209 200 0,4272
C-terminal 210 585 375 0,7299
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-585

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage phiLLS
[NCBI] 		1965465 Uroviricota > Caudoviricetes > Demerecviridae > Tequintavirus > Tequintavirus LLS
Host Escherichia coli O157
[NCBI] 		1045010 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Escherichia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009790180.1 [NCBI]
Genbank nucleotide accession
NC_047822 [NCBI]
CDS location
range 84592 -> 86349
strand +
CDS
ATGGGTTTTTTCGCTGGAAAATATAGCGATGGTAAGACCGTACTATCTTTAAATACTGAATCTGGTGGTGACATTAATCGTCACTATAGTCCAAATAATAATAGTATTTTTCATAGTGATATGCCATTTGTCCTAGTTGATGGTACTTATGAGGCAGGATTAGGAGATGCCGGGAATGGGTTTTTTGTCTGTCAGATGCCCTCTGACATAATAAATATTAAATCCAACGACCCGGGTAGAGTTATACTAACTGCTATTGAGATTAATGGTACTCATAGGGCTTTTCTTAATGGTACTCAAAGTAAGGTTGGCCAAACTATAGTTGCTACTCAAGCAGATCCCTTTAGATCTTTTGCTAGTGTTTCTCAAACCAGTGGATTTGCATTTGGTAATAGTCTAGCATCTGGCACTTATAATTATAATCCCTCTCTAGGGCATGAAGAATCTATCTCTAGAAATGGTACTGGAGGTACTACGTTACATAGTACCTATCACGGTATAGTTAGGCCCGGTGCGGGAGCTCCTGTAGGTATTACTGTTGCACAAGCTTTTGAGCAATTGGGTTTCCCTACTAATAGTAGCACAGTACCTGTAGATGGGAATAACCCGTACTATTGGGATCCCGGATGGATGTCGCCTCTAGGAGCAGCGCATAGAGGGCATGATTGGTTTTATGTCTGCAATTCTAATATACGTGGATATGGTGGAGTTAGACAAGGGCTCCCAGGTAATGTAAATACTATGTACCACGACGGTGGGAACAGGTTTGTTTGTAGGGGATCTACTACTAATCTAGCTAACCAGTCGGGTGACTCTACAATACTACAGGATTGGTATAATATAACTCCTACTAAGGTTATTTGGTATGTTCTTAATTTAAGGTACTCGAATGGTGGAATGAGTATTTCAGGTAATCCCTTTACTGGTTCTGATATTCTTATATCTCCTTCTAATTTCATAATTAAAGGGGTAAGTCTCCCTAATACCGGGTATAAATTTATTAATCAGAATGCTTTTGGTAACTTAGGTTATCGTCCTGATATGGAGTATATAGGGAATAACGCAGCGTATACTGGAGCCTTCGGAGATACCACTGCAAGGTGTGAACTTGTAGGATCTAGTAATGGAGGGTTGTGGTCTCCTGTAGATTATGGAGGGGCTAAATCCCAAATTAGCATTTACAAATTTGGAGCAGGTAAACAGTGGTATGTAAACTCTAACGATAATACTATTGGTAATGAGCATGGGGTTGTTTGGGGACCCTCAGCAGTTCCACTGCGACTTTTTGGTGGAAATGTAGGTAGTTCCTATATGGGAGATGATATTACTCCCCACTATCCAGGAACGGGTGATAGATACGTTGGTTTATCAACTATTGGGCTAGGTATACCAGGCGGAAATGCTACAGTAATTCTTACTACTGAAGTTATATCAGGTAATCTTAATTGTGCGGGTGTTCCAGCTAATACATGGAATAATGGTGTGTTTCAAGTGCAAGGAAGAAGAGCGTATAGCTATAGCGGCGGGGATGCAATATTCCACCAGATTTTAACGCTACCTGTGGGCTATCTAGTACCTTTTCATACTACATCTGCTTTTAGATACACGCCTAACAATGCTCTTAGTAGAAACAGTTTTATATATACCGTTAAAAATCTAGGAAATGGAAATGTAGAGTTAGGAGTAGTTATGCATGTGAGTTTGGGTAGCGCAGTTTTCCTACCTAGATTAAGAGTAACAGTTCAACGCCTTACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a07f5dfa2c9933ba6f88f77aa0ca31b2cbab3c0e59746821891013e6f173f103
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2464
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of new bacteriophage phiLLS Rubi-Rangel,L., Amarillas,L., Carrillo,H. and Leon-Felix,J. 2013-05-17 — GenBank