Protein

View in Explore
Genbank accession
YP_009802289.1 [GenBank]
Protein name
base plate tail tube protein
RBP type
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MFYSLMRESKIVIEYDGRGYHFDALSNYDASTSFQEFKTLRRTIHNRTNYADSIINAQDPSSISLAINFSTTLIESNFFDWMGFTREGNSLFLPRNTPNIEPIMFNMYIINHNNSCIYFENCYVSTVDFSLDKSIPILNVGIESGKFSEVSTFRDGYTITQGEVLPYSPPAVYTNSAPLPALVSASMSFQQQCSWREDRSIFDINKVYTNKRAYVNEMNASATLAFYYVKRLVGDKFLNLDPETRTPLIIKNKYVSITFPLARISKRLNFSDLYQVEYDVIPTADSDPVEINFFGERK
Physico‐chemical
properties
protein length:298 AA
molecular weight: 34291,27820 Da
isoelectric point:5,35352
aromaticity:0,14094
hydropathy:-0,26376

Domains

Domains [InterPro]
IPR056389
ATT
1–297
IPR056389
YP_009802289.1
1 298
Architecture
ATT
ATT 1-297 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009802289.1
1 298
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,9378
Central domain 11 209 200 0,0240
C-terminal 210 298 88 0,2367
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-298

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage Gostya9
[NCBI] 		2182345 Uroviricota > Caudoviricetes > Demerecviridae > Tequintavirus > Tequintavirus gostya9
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009802289.1 [NCBI]
Genbank nucleotide accession
NC_047979 [NCBI]
CDS location
range 87873 -> 88769
strand -
CDS
ATGTTTTATTCTCTCATGCGAGAGTCTAAAATAGTTATTGAGTATGACGGTAGAGGGTATCATTTCGATGCCCTCTCTAACTATGATGCTAGTACGTCTTTTCAGGAGTTTAAAACCCTTAGGCGTACTATCCATAATCGTACTAACTATGCAGACTCTATTATTAATGCTCAAGATCCTTCATCTATTTCATTGGCAATAAATTTCAGTACTACGCTTATTGAGTCTAATTTCTTTGACTGGATGGGATTCACGCGTGAGGGAAATTCTTTATTTTTGCCAAGAAATACTCCCAATATTGAACCTATTATGTTCAATATGTATATTATTAATCATAATAATAGCTGTATTTATTTTGAAAACTGTTATGTATCAACAGTTGACTTTTCTCTAGATAAGAGTATACCGATTCTAAATGTTGGTATTGAGTCTGGAAAATTCTCTGAAGTATCTACTTTCCGTGATGGATATACAATTACACAAGGTGAGGTACTCCCATATAGTCCTCCGGCTGTGTATACCAATAGCGCACCATTGCCTGCATTAGTTTCAGCATCTATGTCCTTCCAGCAACAATGTTCTTGGAGAGAGGATAGAAGTATATTTGATATAAACAAAGTTTATACTAATAAACGAGCTTATGTCAATGAGATGAATGCTTCCGCAACGCTAGCTTTCTATTATGTTAAGAGATTGGTAGGAGATAAGTTCTTGAATCTAGATCCTGAAACAAGAACTCCACTAATTATTAAAAATAAATATGTTTCTATAACATTCCCTTTAGCACGTATTTCAAAACGCCTAAACTTCTCAGATTTGTATCAGGTAGAGTATGATGTAATCCCTACTGCTGATTCAGACCCTGTAGAAATAAACTTCTTTGGAGAAAGAAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ced2b438a5c8493959bbc7245325fed9a6e75a82c974227f0e9ce34d97f02036
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7847
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Looking for novel host receptors of T5-like bacteriophages Kulikov,E.E., Letarov,A.V. and Golomidova,A.K. 2019-11 — GenBank