Protein

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Genbank accession
AYN56124.1 [GenBank]
Protein name
receptor-binding protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MSFFAGKFSDGKTVLSLNAANGGDINQHYSPNTNSIFHSDMPFVLVDGTYEAALGDAGNGYFVTQMPWDIINIKSNDPGRVILTAIEINGTHRGFLNGTQSQVGQFLTFFEDQPRAGAELAITSAFAIGDSLAHGTYIYNGGLGHEESIARQGTGGTLLQSSGFQIFRPGGVSAGEAISRAWGLMGFPTGVSTVPIDGGNADYWEPNWQAPVGSAGRGHDWFYVCSSNIRGFAGKKGVLPDNVNVIYQSPAYPEKIYVCRGSTSNMAAQSARKVYVQDWYNVTPTKVIWYVLNLRYSNGSMGVSGNPFTGSDILISPSNFTIKGVSLPNTGYKFINQNAFGNLGYRPDMEYVGNNAAYTGVFGDNTARCEFIGSSNGGLWSPVNYGGAASQISLYKFGVGKQWYVDTNTNSIGNEHGSVWSPSTVPLRLFPGNVASTYVGDDITPSYPGAGDFYTPLATVWLGLPNAHSTVILTTEVIMGNLNTAGMPVRTYGGSAWQVQGRRQQSYTAGDGVFHQILTLPPGYLVPYHSTTSYSYTQTWASRPDEMAFRRNGYIYTVKNLGNGNVELGVIIHAAEAAAIFLPRLRVTVQRLT
Physico‐chemical
properties
protein length:593 AA
molecular weight: 63917,58230 Da
isoelectric point:6,41510
aromaticity:0,12310
hydropathy:-0,16880

Domains

Domains [InterPro]
IPR059609
RBD
1–593
IPR059609
AYN56124.1
1 593
Architecture
RBD
RBD 1-593
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AYN56124.1
1 593
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,5698
Central domain 11 238 229 0,8682
C-terminal 239 593 354 0,7643
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-238
C-terminal
239-593

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage STG2
[NCBI] 		2480623 Uroviricota > Caudoviricetes > Demerecviridae > Epseptimavirus > Epseptimavirus STG2
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AYN56124.1 [NCBI]
Genbank nucleotide accession
MK005300 [NCBI]
CDS location
range 112002 -> 113783
strand +
CDS
ATGAGTTTTTTCGCAGGAAAATTTAGTGATGGTAAAACTGTATTATCTCTAAACGCTGCTAATGGTGGTGATATAAATCAGCACTACTCTCCAAATACTAATAGTATTTTCCACTCAGATATGCCATTTGTCCTAGTTGATGGGACTTATGAGGCTGCTCTAGGTGATGCAGGTAATGGGTACTTTGTTACTCAGATGCCATGGGATATTATAAATATTAAATCCAATGATCCTGGTAGAGTTATATTAACTGCTATTGAGATAAACGGTACTCATAGGGGTTTCCTTAATGGTACCCAATCTCAGGTTGGTCAGTTCTTAACATTCTTCGAAGATCAACCACGTGCTGGTGCTGAACTAGCTATAACATCTGCTTTTGCAATCGGTGATAGTTTAGCTCATGGTACTTATATCTATAATGGTGGTCTTGGTCATGAGGAATCTATTGCTAGGCAGGGAACTGGTGGTACTTTACTACAATCTTCCGGTTTCCAGATCTTTAGACCTGGTGGTGTTTCCGCAGGTGAAGCTATTTCCAGAGCCTGGGGATTAATGGGCTTTCCTACTGGTGTTTCTACTGTTCCTATAGATGGTGGTAACGCCGATTATTGGGAACCTAACTGGCAAGCGCCTGTTGGTTCTGCTGGTAGAGGCCATGATTGGTTTTACGTTTGTAGTTCTAATATTCGTGGCTTCGCAGGTAAAAAAGGCGTACTACCGGATAACGTAAACGTTATTTATCAATCTCCTGCGTATCCAGAAAAAATATATGTTTGTAGAGGTTCTACTTCTAATATGGCTGCTCAGTCTGCTAGAAAGGTGTATGTACAGGACTGGTATAACGTTACGCCAACTAAAGTTATTTGGTACGTGCTAAATCTGCGCTATTCTAATGGTAGTATGGGAGTTTCTGGTAATCCATTTACTGGTTCAGATATCTTAATATCACCATCTAACTTTACTATTAAAGGTGTTAGTCTACCAAATACAGGCTATAAATTTATTAACCAGAATGCTTTCGGAAACTTAGGCTATCGCCCTGATATGGAATATGTTGGTAATAACGCTGCGTATACCGGAGTTTTTGGTGATAATACTGCACGATGTGAATTCATCGGCTCTAGTAATGGTGGGTTATGGTCGCCCGTTAACTATGGGGGTGCAGCTTCTCAAATTAGCTTATATAAATTTGGTGTAGGTAAACAATGGTATGTAGATACTAATACTAACTCCATTGGTAATGAACATGGATCTGTGTGGAGTCCTAGTACTGTACCTCTCAGATTATTCCCAGGCAACGTTGCAAGTACTTATGTAGGGGACGATATAACTCCATCCTACCCTGGTGCTGGTGACTTCTACACACCTTTGGCCACAGTTTGGTTGGGATTACCAAATGCTCACTCTACTGTTATATTAACTACTGAAGTTATTATGGGTAATCTTAATACTGCTGGTATGCCTGTACGTACTTATGGTGGTAGTGCTTGGCAGGTACAAGGCAGACGTCAACAAAGTTATACAGCTGGTGATGGTGTATTCCATCAGATTCTTACTCTGCCACCTGGCTATCTAGTACCATATCACAGCACAACTTCCTATAGTTATACCCAAACGTGGGCTAGTAGACCTGATGAGATGGCTTTTCGTAGAAATGGGTATATTTATACAGTAAAAAACCTTGGTAATGGTAATGTTGAGTTGGGTGTTATTATTCATGCTGCAGAAGCAGCTGCTATCTTCTTACCAAGACTACGTGTAACAGTTCAACGCCTAACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3be391a671312cce5e6580795f6dde4bef9eae21e993eea50561679c9db7de83
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2696
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophage control of Salmonella Duc,H.M. 2021-06-07 — GenBank