Protein

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Genbank accession
ATN92736.1 [GenBank]
Protein name
tail spike protein with colonic acid degradation activity
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSDITPNVVVSMPSQLFTMARSFKAVANGKIYIGKIDADPVNTENQIQVYVENEDGSHVPVSQPIIINAAGYPVYNGQIAKFVTVQGHSMAVYDAYGAQQFYFPNVLKYDPDQALPAFKADLTGPDGAALVGYGDSTVEAELDILTASNGWYVTPDQFGAKGDGTTDDTAAISAAIAECASTGKTLLLLNKRYVWNGPTTSTDKISVMGVRRPSPDATLSKLENGSIIVGTMIFSGTRVQVQNFGVDHGSATFTSGGDALVLSATGKNGLFGIIRNCVGLGRNSSDAYHAILCEGYKYSTVRDIIGCQNLYGYAQKCNYSVSSGIVVKNNQNGIIIKSDSVFGDGSQSILSDAVIDGNGLTSIGVWVFSMDAQLQKVNISNVTSSGCSYDIVVQAAESVINEININNVATSLSRIASICLAGTAVDKIYTANISNVAIGEAAGLLIDAQTCNFLNLTNVTGRITNESTHANDSINIGALVGSSNISNVFPTINYSQDVLAGITYLNNYKNNTLTNYKANVFGVGAPKPGYDTQNIDTNVGSMYLRSSATNSSFLRLTPLSNSSITTLNITTQAGGVISPGYTWWLQNASPSFTLSIVPSSGGHIVTSGNSTKVLSGGDKIGFMFDGETWIQI
Physico‐chemical
properties
protein length:632 AA
molecular weight: 66693,92190 Da
isoelectric point:4,92006
aromaticity:0,08228
hydropathy:0,03054

Domains

Domains [InterPro]
IPR009093
ATT
1–113
IPR009093 DC_2190 DC_0524
IPR009093
ATT
1–105
IPR009093 IPR012334
IPR036730
ATT
2–109
IPR036730 IPR011050
G3DSA:2.170.14.10:FF:000001
Unmapped
2–110
G3DSA:2.170.14.10:FF:000001
IPR036730
ATT
7–109
IPR036730
ATN92736.1
1 632
Architecture
ATT
STR
RBD
ATT 1-113 | STR 114-576 | RBD 577-632
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ATN92736.1
1 632
Domain Start End Length (AA) Confidence
N-terminal 1 167 167 0,9867
Central domain 168 528 362 0,9893
C-terminal 529 632 103 0,9555
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-167
Central
168-528
C-terminal
529-632

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage APC_JM3.2
[NCBI] 		2045361 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ATN92736.1 [NCBI]
Genbank nucleotide accession
MG197996.1 [NCBI]
CDS location
range 25318 -> 27216
strand +
CDS
ATGTCAGACATTACACCCAATGTTGTAGTGAGTATGCCTTCGCAACTCTTCACTATGGCTCGTTCTTTTAAAGCCGTAGCTAATGGAAAGATTTATATCGGGAAAATTGACGCTGACCCGGTAAACACTGAAAACCAGATTCAGGTTTATGTAGAGAACGAAGATGGTTCTCACGTTCCTGTTTCGCAACCAATCATCATTAACGCTGCTGGATATCCGGTATATAACGGACAGATTGCTAAATTCGTTACCGTGCAAGGCCATTCTATGGCTGTTTATGATGCCTATGGTGCTCAGCAATTCTATTTCCCAAACGTGCTGAAGTATGACCCGGACCAGGCATTGCCAGCATTTAAGGCTGATTTGACTGGTCCTGATGGTGCTGCCCTTGTTGGTTATGGAGATTCCACTGTCGAGGCAGAGTTAGACATCCTGACTGCATCTAATGGGTGGTACGTAACTCCTGATCAGTTCGGCGCGAAGGGTGATGGCACTACCGATGACACAGCGGCGATTAGTGCGGCAATTGCTGAGTGTGCTTCTACAGGGAAAACATTGCTCCTGCTTAATAAACGCTATGTGTGGAATGGGCCAACCACATCCACCGATAAAATATCCGTTATGGGAGTCCGTCGCCCAAGTCCTGACGCGACGCTATCCAAGCTGGAAAACGGCAGCATCATTGTCGGTACCATGATATTTTCCGGAACTCGTGTTCAGGTGCAAAACTTTGGTGTAGACCACGGTTCAGCCACATTCACTTCTGGTGGTGATGCGCTAGTGCTTTCCGCAACTGGAAAGAATGGGCTGTTTGGTATCATCCGAAACTGTGTAGGTCTTGGAAGAAACTCATCTGACGCTTACCATGCAATTCTCTGTGAGGGTTACAAATACTCAACGGTGAGAGATATCATTGGCTGCCAGAACTTATATGGCTATGCACAGAAATGTAATTATTCCGTATCAAGCGGTATTGTAGTAAAAAACAACCAAAACGGAATAATCATCAAATCAGACAGTGTATTTGGCGATGGAAGCCAATCAATTCTTAGTGATGCTGTTATTGATGGTAATGGATTAACATCTATTGGCGTTTGGGTTTTCTCGATGGATGCACAACTTCAAAAAGTAAACATAAGTAACGTGACCTCGTCTGGTTGCTCTTATGATATCGTGGTGCAGGCTGCTGAGAGCGTCATTAATGAAATTAATATTAATAACGTAGCTACGAGTTTATCACGCATTGCATCAATCTGCCTGGCTGGAACTGCAGTTGATAAAATTTACACAGCCAATATCAGCAATGTTGCTATAGGTGAAGCAGCGGGACTGCTAATAGATGCCCAGACATGTAACTTCCTTAACCTGACAAACGTAACTGGACGAATAACAAACGAATCAACGCATGCTAACGACTCAATAAACATTGGAGCATTAGTAGGAAGCTCTAACATTAGCAACGTGTTCCCTACCATCAACTACAGTCAGGATGTACTTGCTGGCATTACCTATCTTAATAACTATAAAAACAACACGCTTACCAATTATAAGGCGAACGTGTTTGGTGTTGGGGCTCCGAAACCAGGTTACGACACGCAAAACATTGATACCAATGTCGGAAGCATGTACCTGAGGAGCAGTGCAACTAACTCTTCATTCCTGAGGTTAACGCCACTTAGTAACTCATCCATTACGACGCTTAACATCACCACTCAAGCAGGTGGAGTGATAAGCCCGGGTTACACATGGTGGTTACAAAACGCATCACCATCATTCACGCTGTCTATAGTTCCATCATCAGGAGGTCACATCGTCACTTCAGGCAACTCTACCAAGGTGCTTAGCGGTGGAGACAAGATAGGATTCATGTTCGACGGAGAGACATGGATTCAGATTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
c37be967a56bcc362133d69ce527b2ad661642173de972711b7a1d5439d3be61
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7868
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of a novel Escherichia coli phage APC_JM3.2 isolated from a chicken ceca Stockdale,S.R., Mullally,J., Smith,M.K., Draper,L.A., Ross,P.R. and Hill,C. 2018-01-04 — GenBank