Protein

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Genbank accession
YP_009619923.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,77
Protein sequence
MLLVDLPLTSPEGTSTYADATGRFWTGYSTPPKIIGGALTLDGSGLIYTNSGTDFVLGLKDYDIKFDVNTTSTTLSTVVDYLYGGYTTWQIYFSTDGRLIWTAEGPNESPVIASDPINDGNWHTVLFQRRNGILSVIVDDVVQASVPHGRSYKDQLSTFAFGGRWYLGYSNLFTGKLRNFRVETFDPPLAPIKALHTPPKMYIGWDKPVIVGGPKIGFEYPLLPLTTKKPKAVQITRGVPPWWGPSDSTKVLPTYRLRGRVMQRDPDTGTDYPVMNAQVALFYRKLHTLIDIKLSNAQGYVEFKNLMPGQGAYYAIAFDPDGGPIQNAVIWDQLSSEP
Physico‐chemical
properties
protein length:338 AA
molecular weight: 37478,13050 Da
isoelectric point:6,42982
aromaticity:0,12426
hydropathy:-0,21302

Domains

Domains [InterPro]
IPR001791
LEC
38–209
IPR001791
IPR013320
STR
38–184
IPR013320
IPR013320
STR
38–185
IPR013320
G3DSA:2.60.120.200
STR
39–190
G3DSA:2.60.120.200
IPR001791
LEC
60–185
IPR001791
IPR001791
LEC
94–182
IPR001791
IPR001791
LEC
96–182
IPR001791
DC_0374
STR
155–338
DC_0374
YP_009619923.1
1 338
Architecture
STR
STR 38-338
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009619923.1
1 338
Domain Start End Length (AA) Confidence
N-terminal 1 23 23 0,1350
Central domain 24 251 229 0,4636
C-terminal 252 338 86 0,2966
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-23
Central
24-251
C-terminal
252-338

Taxonomy

  Name Taxonomy ID Lineage
Phage Stenotrophomonas phage vB_SmaS_DLP_5
[NCBI] 		2044561 Uroviricota > Caudoviricetes > Delepquintavirus >
Host Stenotrophomonas maltophilia
[NCBI] 		40324 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009619923.1 [NCBI]
Genbank nucleotide accession
NC_042082.1 [NCBI]
CDS location
range 25139 -> 26155
strand +
CDS
ATGCTGCTCGTAGACCTACCGTTGACCTCCCCGGAAGGGACTAGCACCTATGCGGATGCAACGGGTAGGTTTTGGACGGGGTACAGCACTCCCCCGAAGATCATTGGTGGTGCCCTGACTCTGGATGGGTCGGGGCTGATTTACACCAATAGCGGCACGGACTTTGTTCTTGGTCTGAAAGACTACGACATTAAGTTCGACGTAAACACCACTTCAACTACTTTGTCTACGGTAGTGGATTACCTGTACGGTGGTTACACCACTTGGCAGATTTATTTCAGCACTGATGGTAGGTTGATTTGGACAGCAGAAGGACCAAATGAATCCCCTGTGATCGCAAGTGATCCGATAAATGATGGCAACTGGCACACTGTATTGTTCCAGCGCCGTAACGGTATTTTGTCGGTTATCGTAGATGACGTAGTGCAGGCGAGTGTGCCTCATGGTCGCAGCTACAAAGATCAACTGTCTACTTTTGCGTTTGGTGGCCGGTGGTATTTGGGGTATTCCAATCTGTTTACGGGAAAGCTGCGCAATTTCCGCGTGGAGACTTTCGACCCCCCCCTAGCCCCGATCAAGGCCCTCCATACTCCGCCGAAGATGTATATCGGTTGGGACAAGCCTGTAATAGTTGGCGGGCCTAAAATTGGCTTTGAATACCCACTTCTCCCGCTCACGACGAAGAAACCGAAGGCTGTACAGATCACCCGGGGCGTTCCGCCTTGGTGGGGGCCTTCTGACTCGACCAAGGTTCTTCCGACCTACCGTCTGCGCGGGAGGGTGATGCAGCGAGACCCAGACACCGGAACGGACTACCCGGTGATGAATGCTCAGGTGGCTCTGTTCTATCGAAAGCTGCACACCTTGATCGACATTAAGTTGTCGAACGCACAAGGGTATGTGGAGTTCAAGAACTTGATGCCGGGGCAGGGGGCCTACTATGCCATTGCATTCGATCCGGACGGAGGTCCGATCCAAAATGCCGTGATTTGGGATCAGCTGTCGTCCGAGCCTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
4dbda5241cc04f8b028b1fee12751417acfb95d4ba0112807f6709d7b8e14e55
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7394
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Lysogenic conversion of Stenotrophomonas maltophilia by temperate phage DLP4 Dennis,J. and Stothard,P. 2019-04-16 — GenBank