Protein

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Genbank accession
YP_009224034.1 [GenBank]
Protein name
Hom_end-associated Hint family protein
RBP type
TF
Evidence RBPdetect2
Probability 0,94
Protein sequence
MQNYTNIPSSQRVSDSLALLLNNDLTGISRNSGTAFPTIGLQVGMPFVHLTERKLYRLESLSPVTWTLELDLAKTLVYSETIDTVNALVATKVSLSGGVMTGLLTLSGNPTQTLHAATKGYVDTVGATASASANTRVLKTGDTMTGQLTLPGDPTLDLHAATKRYADYLFNTVNQNKVNKAGDTVNEIYNTGWYRSTGNVGWYNQTYGGGLYMVDSVYLRGTGAQGLIVGPHQLLNNGQIYTGRYGYLENYFASKSAEDRITAASTTESGSGSFYNPGGYYLTRSGAYVYLVKPRQNCNCDCNCNCSCFPAGTMVLMADGTQKLIETIQVGDQVMGWDGQPDEVDLMEYPILGERRLAGFADGSLSWSEEHLAWTRRDGHEWFGTLGKNWWYAEVLADHVVGLRDNATLRDLDEDRDEFAHVSGWVKRKLVAEKADYNTQLYLPRTKRTHMIIVNGYLMTAGTDGFAVDYTQVNWKGLPHVAA
Physico‐chemical
properties
protein length:483 AA
molecular weight: 53083,90100 Da
isoelectric point:5,60804
aromaticity:0,09938
hydropathy:-0,29586

Domains

Domains [InterPro]
DC_1293
STR
5–170
DC_1293 IPR007001 G3DSA:2.170.16.10
IPR036844
STR
305–403
IPR036844
IPR036844
STR
307–403
IPR036844
IPR007868
RBD
308–344
IPR007868
YP_009224034.1
1 483
Architecture
STR
RBD
STR
STR 5-170 | RBD 178-251 | STR 301-403 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Achromobacter phage JWF
[NCBI] 		1589748 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Achromobacter xylosoxidans
[NCBI] 		85698 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009224034.1 [NCBI]
Genbank nucleotide accession
NC_029075 [NCBI]
CDS location
range 29502 -> 30953
strand +
CDS
ATGCAAAACTACACCAACATCCCGTCAAGCCAGCGAGTCTCCGACTCGCTGGCGCTGTTGCTGAACAACGACCTGACGGGGATCTCGCGCAACAGTGGCACGGCCTTCCCGACCATCGGTCTGCAAGTCGGGATGCCCTTCGTCCATTTGACCGAGCGCAAGCTGTACCGCCTGGAGAGTCTGTCGCCCGTCACCTGGACGCTGGAGCTGGACCTGGCCAAGACCCTGGTCTACTCGGAAACCATTGACACGGTGAACGCGCTGGTGGCCACCAAGGTTTCGCTGTCGGGCGGCGTCATGACCGGATTGCTGACCTTGAGCGGCAACCCGACGCAGACCCTGCACGCGGCCACCAAGGGCTACGTGGATACGGTCGGCGCTACCGCTTCAGCGTCCGCCAATACCCGCGTGCTCAAGACGGGCGACACCATGACCGGCCAGCTCACGCTGCCGGGAGATCCGACCTTGGATCTTCATGCGGCGACCAAACGCTATGCCGACTACCTGTTCAACACGGTCAACCAGAACAAGGTGAACAAGGCCGGCGACACGGTGAACGAGATCTACAACACCGGCTGGTATCGCTCGACGGGTAACGTGGGCTGGTACAACCAGACCTACGGTGGCGGCCTGTACATGGTTGATTCCGTCTACTTGCGCGGCACGGGCGCACAGGGGTTGATCGTCGGCCCTCACCAGCTACTGAACAACGGTCAGATCTACACCGGACGCTACGGCTACCTTGAAAACTACTTCGCTTCCAAGAGCGCGGAAGATCGCATCACGGCGGCGAGCACGACCGAATCGGGCAGCGGCTCCTTCTACAACCCGGGCGGCTATTACCTGACGCGCTCCGGCGCCTACGTCTACCTCGTCAAGCCGCGCCAGAACTGCAACTGTGACTGCAACTGCAATTGCTCGTGCTTCCCGGCCGGTACGATGGTGCTGATGGCCGATGGGACGCAGAAGCTGATCGAGACCATCCAGGTCGGAGATCAAGTCATGGGCTGGGATGGCCAGCCTGATGAAGTTGACTTGATGGAATACCCGATCTTGGGCGAGCGCCGCCTGGCTGGCTTTGCTGACGGCTCGTTGAGCTGGTCGGAAGAGCACCTGGCCTGGACGCGCCGCGATGGCCACGAGTGGTTCGGCACGCTGGGCAAGAACTGGTGGTATGCCGAGGTACTGGCGGATCACGTCGTCGGCCTGCGCGACAACGCCACGCTGCGGGATCTGGATGAAGACCGCGACGAGTTCGCGCACGTTAGCGGCTGGGTCAAGCGCAAGCTGGTGGCCGAGAAGGCCGACTACAACACCCAGCTGTACCTGCCGCGCACCAAGCGCACGCACATGATCATCGTCAACGGCTACCTGATGACGGCCGGCACTGACGGCTTCGCTGTGGACTACACGCAAGTGAACTGGAAAGGACTCCCCCATGTTGCTGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7ac516ee8a1fa532f6f0893837831994a763c867f3cbf51d6ebddde54f1a264e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7111
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and genome comparisons of three Achromobacter phages of the Siphoviridae family Dreiseikelmann,B., Bunk,B., Rohde,M. and Wittmann,J. 2017-03-29 — GenBank