Protein

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Genbank accession
XNP04537.1 [GenBank]
Protein name
depolymerase Dep6
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MALYRQGKAAMDANGIVTGTGTNWQSALTLIRPGATILFLSSPIQMAVVNKVVSDTQINAISTNGAAVPSSDYAILLSDSLTVDGLAQDVAETLRYYQSQETVIAEAVDFFKDFDLSTLQELVEQAKEEAAASQQSASASQQSASASQQSASASQQAAAASQQAAAASQQAAAASQQAADDAEATRDEIQQIIDDSGEQSTLVVLAQPNGAKNIGRCSDIATLRTIEPTLPNQKIEVIKYASGYKPITGYFEYDQTDSTSVDDGGVCIVTAGGKRWKRIFDGAVNVAWFGIPSDGDITNAINKAISYAKPKRLGLVISAGQYKYTGSEMLEIDLGFISLVCHVGCASIDFSGVTSTYAINVYSSATYPAPLYRNTVNKLSGIECFGAKVAGKNGLLIGRPGGAQYYNGQCCIEHCSFHDFDYVVSCANSTWRYKFNECVITKGITSIFYAPAGLLDSGESITFNGGMVADASGAPIIIACDAFNLGLDGTSTLNTRVQITGNGATVSMSGMGNIENPGQSVWYPYVTCTGTGARFILSESTLTINQPLAQTQPIIYVGINAFIIFNVVKFPGNSYKFEQNSSDMVRAFVEGPGSVMCNACTSDIASGAGNIPVHRSLSPVYNSGFEHGNNTGWSINNAGSASQTAVVSAEYAKAGSYGMRMTSIAGLSIFATQQFNVKPGQYYMTSFWARVVNIGANGNAAGNINLSFYSQNGTQIAGPTANLPVNVADWAVYGSFIRGIVPPGAATAVISMRAYDGAVVDFDGVLINFI
Physico‐chemical
properties
protein length:770 AA
molecular weight: 81102,85600 Da
isoelectric point:4,79536
aromaticity:0,09091
hydropathy:0,03338

Domains

Domains [InterPro]
DC_1966
ATT
1–397
DC_1966 G3DSA:2.60.120.260
Coil
Unmapped
116–136
Coil Coil DC_0903
IPR008979
STR
621–769
IPR008979
XNP04537.1
1 770
Architecture
ATT
STR
ATT 1-397 | STR 398-769 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XNP04537.1
1 770
Domain Start End Length (AA) Confidence
N-terminal 1 296 296 0,9960
Central domain 297 616 321 0,9957
C-terminal 617 770 153 0,9927
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-296
Central
297-616
C-terminal
617-770

Taxonomy

  Name Taxonomy ID Lineage
Phage Klebsiella phage vB_KpnS_JYSS2
[NCBI] 		3385024 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Klebsiella pneumoniae
[NCBI] 		573 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XNP04537.1 [NCBI]
Genbank nucleotide accession
PQ900355 [NCBI]
CDS location
range 1 -> 2313
strand +
CDS
ATGGCACTATACAGACAAGGCAAAGCCGCGATGGACGCAAACGGCATCGTCACCGGGACTGGAACTAACTGGCAATCAGCGCTAACGCTAATTCGCCCAGGCGCTACGATCCTGTTTTTATCGTCCCCGATTCAAATGGCGGTAGTTAACAAGGTTGTAAGTGATACGCAAATCAATGCTATCTCCACAAACGGCGCGGCTGTTCCGTCCAGTGATTACGCGATCCTGTTAAGCGACTCCCTGACCGTTGACGGCCTGGCGCAGGATGTTGCGGAAACTCTGCGTTACTACCAATCGCAGGAGACCGTCATTGCTGAGGCGGTAGATTTCTTTAAGGACTTTGATTTATCCACTTTGCAAGAATTGGTAGAACAGGCAAAAGAGGAAGCTGCCGCAAGCCAGCAGTCAGCATCAGCAAGCCAGCAGTCAGCATCAGCAAGCCAGCAGTCAGCATCAGCAAGTCAGCAGGCAGCGGCAGCAAGTCAGCAGGCAGCGGCAGCAAGTCAGCAGGCAGCGGCAGCAAGTCAGCAGGCAGCAGATGACGCTGAAGCAACTCGCGATGAAATTCAGCAGATCATTGATGATTCCGGCGAACAGTCAACGCTGGTTGTATTGGCTCAGCCAAATGGTGCTAAAAACATAGGGCGCTGTAGTGACATTGCGACCCTACGGACAATAGAACCGACATTACCAAACCAAAAGATAGAAGTCATAAAATATGCCTCAGGCTACAAGCCAATAACTGGCTATTTTGAGTATGATCAAACTGACAGTACATCCGTTGATGACGGAGGTGTCTGCATTGTCACTGCTGGTGGAAAGCGCTGGAAGCGGATTTTTGATGGTGCAGTAAACGTTGCATGGTTCGGTATTCCATCGGATGGCGATATAACCAACGCTATCAATAAGGCGATTTCATATGCCAAACCAAAACGTTTGGGTTTAGTTATCTCTGCTGGACAGTATAAATACACTGGTTCGGAAATGCTGGAAATTGACTTGGGATTTATATCCTTAGTCTGCCATGTAGGTTGCGCGTCAATAGATTTTTCTGGTGTAACCTCCACTTACGCCATTAACGTCTATTCATCAGCAACATATCCAGCCCCACTGTACCGCAACACAGTAAACAAGCTGTCAGGGATTGAATGCTTTGGTGCTAAAGTTGCTGGTAAAAATGGATTACTTATCGGCAGGCCCGGTGGCGCGCAATATTATAATGGACAGTGCTGCATAGAACATTGCTCATTCCATGACTTCGATTATGTAGTTTCTTGCGCAAACAGCACCTGGAGGTACAAGTTCAATGAGTGCGTTATTACTAAGGGAATAACTTCGATATTCTATGCTCCGGCTGGTCTTTTAGATTCAGGCGAGAGCATAACGTTTAATGGTGGGATGGTTGCAGACGCAAGCGGTGCACCGATCATAATTGCATGTGACGCTTTCAATCTTGGCCTTGACGGCACATCAACTCTTAATACAAGAGTTCAGATCACCGGAAATGGGGCTACAGTATCAATGTCTGGAATGGGTAACATAGAAAACCCTGGACAGTCGGTGTGGTATCCTTACGTTACCTGTACTGGCACTGGTGCAAGATTTATTCTTTCTGAAAGCACACTGACCATTAATCAGCCATTAGCACAAACACAGCCTATAATTTATGTCGGAATAAACGCATTCATAATATTTAATGTGGTTAAATTTCCTGGTAATTCATACAAATTCGAACAGAACTCATCGGATATGGTTCGGGCATTTGTTGAGGGGCCTGGATCTGTAATGTGCAATGCTTGTACTAGCGACATAGCATCAGGAGCCGGAAATATTCCTGTACACCGATCTTTGTCACCTGTTTATAATTCAGGTTTTGAGCATGGTAATAATACCGGATGGTCAATTAATAACGCTGGTTCTGCATCACAAACTGCCGTTGTGTCTGCGGAGTATGCGAAGGCTGGGTCATACGGCATGAGGATGACTTCAATCGCCGGGTTGAGCATTTTTGCAACTCAGCAGTTTAACGTAAAACCAGGACAGTATTATATGACCTCTTTTTGGGCAAGGGTTGTAAACATCGGCGCAAATGGGAATGCGGCTGGAAATATAAACCTCTCATTCTACAGCCAAAACGGAACACAGATTGCTGGCCCTACAGCTAACCTTCCGGTTAACGTTGCAGATTGGGCTGTTTATGGGAGCTTTATAAGAGGTATCGTTCCTCCCGGAGCGGCAACGGCAGTTATTTCTATGCGCGCGTATGATGGCGCAGTTGTCGATTTCGATGGCGTTCTAATAAACTTTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7c6c05094591f63dee4edb4d3b865db807cd7c178844abe9fa580a9fe2817f96
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3232
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50