Protein

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Genbank accession
AUS02995.1 [GenBank]
Protein name
pectate lyase superfamily protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MGSLSNYFGGVAGSATAVKHQTLETLWGLPPGSVQVWQAGATVTSPEQIRVYTDGIAWYAPDASPTNPITQPENPALDDKWIVKSSDVNSPVLATFIGDGTTMNFTVPNSSGAYTETVDVSIDGISQTPSVDFIFAQEVLTFIGEAPPYLSEISVKILLPNVAGQDTGVTPLTQDTIIADGTQTVFSTPSTRITNPANLMVWAGGIRQRPGMDYNVNNSGDIVFNEAPYELAEIDVMWFAPRNIDETDVTSSTALANGSTVQRTLGDRFSDVVNVKDFGAVGDGVTDDADAFQRAVDSDLGNTIYVPDGHVFIIGSEVDLRFKNLVGMGGISQSTSANGVSEIAHPVGYTGVMFSYPGGTVRDIYFRGNAGTATCFNRIGYNQRFQDCTFRVFNTALHSIGGTAGATVNFYIDRCNFYSNTRCFFSEDVNSNDSTTTHISNCEFNNNNECIIFDKNAYGCSFTNLIFEYCNVPLKAKAFASCTFDTHWYEYTLDGSTRDIITTNSQLFQRNVVTSLYIHPSSTWDNNITSDGTSAGGVFTDRDVLRVGGFQGDRVKVQDRYLQDDFNSAFGGTTDRQFGIKGSDQHPVSGLNTTVRVDHGSGGRVVFGHTDETRTTKTTQRRAIGPNSTGDAAYLGLDEWDANIERSWEAYDPNGTTPTGKFRALMYFQYRNTGTPVLEQSGYVLSKIGTGHWRLTRETSVPDFSSPLIVVSGIVSSDFLLHRIGSITASSFDIFFADTSSVAVDPDRFTLGFQSIL
Physico‐chemical
properties
protein length:757 AA
molecular weight: 82249,80550 Da
isoelectric point:4,61370
aromaticity:0,10832
hydropathy:-0,22087

Domains

Domains [InterPro]
IPR058969
ATT
35–83
IPR058969 DC_2249
IPR058969
ATT
35–95
IPR058969 IPR012334
IPR011050
STR
270–539
IPR011050
IPR024535
ENZ
273–470
IPR024535
DC_0160
STR
380–757
DC_0160
AUS02995.1
1 757
Architecture
ATT
ATT
STR
ATT 35-95 | ATT 213-396 | STR 397-757
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AUS02995.1
1 757
Domain Start End Length (AA) Confidence
N-terminal 1 288 288 0,9932
Central domain 289 552 265 0,9612
C-terminal 553 757 204 0,9405
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-288
Central
289-552
C-terminal
553-757

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 2.275.O._10N.286.54.E11
[NCBI] 		1881285 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio cyclitrophicus
[NCBI] 		47951 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AUS02995.1 [NCBI]
Genbank nucleotide accession
MG592671 [NCBI]
CDS location
range 261975 -> 264248
strand -
CDS
ATGGGATCACTCTCAAATTATTTTGGGGGAGTAGCAGGATCTGCCACTGCCGTAAAACACCAAACATTGGAAACTCTATGGGGATTACCACCAGGATCAGTACAAGTGTGGCAGGCCGGAGCGACAGTTACGTCTCCTGAACAAATACGTGTATATACTGACGGAATTGCGTGGTACGCACCTGATGCATCACCAACAAACCCAATAACACAACCTGAAAATCCAGCATTAGATGATAAGTGGATCGTGAAATCTTCTGATGTGAATAGTCCAGTACTTGCAACGTTTATAGGTGATGGCACAACTATGAATTTTACTGTTCCTAATTCATCTGGCGCATATACCGAAACTGTTGATGTTAGTATTGACGGTATTTCGCAAACACCAAGTGTTGATTTTATCTTTGCACAGGAAGTTTTAACCTTTATAGGAGAAGCTCCGCCTTATTTGTCAGAAATCAGTGTTAAGATTTTACTTCCTAATGTTGCAGGTCAAGATACTGGTGTCACTCCTCTTACACAAGACACAATCATTGCAGATGGCACGCAAACTGTGTTTAGTACCCCGTCTACTAGAATAACAAATCCAGCAAATTTAATGGTTTGGGCTGGCGGTATTAGACAACGACCTGGTATGGATTACAATGTAAACAACTCTGGTGATATTGTTTTCAATGAAGCTCCATATGAATTAGCAGAAATAGACGTTATGTGGTTCGCTCCGCGCAATATCGATGAGACTGATGTCACTTCTAGCACAGCATTAGCTAATGGATCTACAGTTCAACGAACTTTAGGTGATCGTTTTAGTGATGTTGTGAATGTGAAAGACTTTGGAGCAGTAGGTGATGGTGTTACTGATGATGCTGACGCTTTCCAAAGAGCTGTTGACTCAGATCTAGGAAACACTATATATGTTCCTGATGGGCATGTCTTTATTATCGGATCTGAAGTTGATCTTAGGTTTAAGAACTTAGTTGGGATGGGTGGAATTTCACAATCTACTTCTGCTAATGGCGTGTCTGAGATCGCCCATCCCGTAGGATATACAGGAGTGATGTTCTCATACCCTGGTGGTACTGTAAGGGATATATACTTCCGAGGCAATGCTGGAACAGCCACCTGCTTCAACCGAATTGGGTATAACCAACGTTTTCAAGATTGTACCTTTAGGGTGTTCAACACAGCTCTTCACTCTATTGGCGGCACTGCCGGAGCGACAGTTAACTTCTATATTGATCGATGTAATTTTTACTCTAATACACGTTGCTTCTTTTCGGAAGACGTAAACAGTAATGATAGCACAACAACACACATCTCAAATTGTGAATTTAACAACAACAACGAGTGTATTATCTTCGATAAAAATGCTTACGGATGTTCGTTTACTAATCTAATATTTGAATACTGTAATGTTCCACTAAAGGCAAAAGCTTTTGCCTCATGTACATTTGATACACATTGGTACGAGTACACACTTGACGGTAGTACAAGAGACATCATCACTACTAATAGTCAACTCTTTCAGAGAAACGTGGTTACTAGCTTATACATCCATCCTTCTTCAACTTGGGATAATAATATAACCTCTGACGGCACCTCAGCAGGTGGGGTATTTACAGACAGAGATGTTCTTCGTGTAGGCGGATTTCAAGGTGATAGAGTGAAGGTCCAAGATAGGTACCTCCAAGATGACTTCAACTCAGCCTTTGGCGGAACAACTGATAGACAGTTCGGCATTAAAGGTTCCGATCAACATCCAGTATCAGGTTTAAACACAACAGTGCGTGTAGACCATGGTTCTGGTGGTAGAGTAGTATTCGGGCATACTGATGAAACACGTACTACAAAAACAACACAACGACGTGCTATTGGACCAAATTCAACAGGGGATGCTGCGTACCTGGGTCTAGATGAGTGGGATGCTAATATAGAAAGGTCTTGGGAAGCGTACGATCCAAACGGTACCACCCCTACTGGTAAATTTCGAGCTCTGATGTACTTCCAGTATCGAAACACAGGAACGCCTGTGCTTGAACAATCTGGATACGTTCTTTCAAAAATTGGAACAGGGCATTGGCGGTTAACGCGTGAGACATCCGTTCCTGACTTCAGTAGCCCATTAATAGTTGTATCAGGGATAGTCTCCTCGGATTTCCTACTACATCGTATTGGCAGTATCACAGCATCATCTTTTGATATCTTTTTTGCAGATACTTCTAGTGTTGCAGTAGATCCAGACAGATTCACATTAGGATTCCAAAGCATACTGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
f2777fa40b43617c7c9e8383e314030d5fd919868032d53411f45138760e09b2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6886
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank