Protein

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Genbank accession
XMN71877.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,65
TF
Evidence RBPdetect2
Probability 0,89
Protein sequence
MEFIVIQGDKTLNLNNRKPLCSVTKAEHRQSLLSEDVINITVESKTPLALQVGNYIEYENRRYTLNSAPKVKKEQGYYTYDLVFEGVQYLLRDKVYFNLDAQGFQNTADFPLTGEINIFLTTLITNINSISDFTWVLGEYPQNTETKTLTFNNENCLAVLQKICQEYDTEFEIKQDLERKSYTLNIKKIGETLNQTFEYGKGNGLYSLSRENANDNVVTRLYVFGSTNNIKSGYRDYSQRLRLPISHGKDYIQDDAKVKLFGLKEGVKNFDDIKPTFKGIVSGVTNLENGSQEIEVSNMDFDLNETDSNGTKYLLNDTPAKLHINKGNLAGYEFEILKNGGYNHATKAFRVKQFTDERGQKFPEAGSVFSFAVGDEVTLLDIALPEQYITNAENKLFEEGQKEYEKQSVNNLKYNLELDPLYLQQIGASTSIFFKIGDYIRVIDEPLKIDKTTRIVDITRDLLDEYNYKIGIADTYEISFVASLLTDIKDTKTVIKTQEQINRRNYLNGYRNLQELRESVFDVEGYFDPTHIKPESIEANMLSVGAKSQQFALENISLNPNIEGNPARTFISGGKLIHFSLEDDIREWNILPYSRNDLLNQVYYVYAKCSRGNSMGVWHITTEQIKFDSRSDYYYFLCYLLYTPKDGKREAESMYGNVFMHGGQITAGRIKSLNGQTYFDLDNGEIAGTIKFKSGNGYAEVGSAIQQAVDAVSVGGRNLVRESNVFRNGISADGIGSNITSEGYLRVISSISNNNWHTRWYSRTDEIEEQMTEGEAFTITFWVKRLSGYGKPTIYLKDGMGYFHLNGELNNSEFKPLSYTGTWKKAESLHPHLGWAPANGEFIIKCWKIEKGNKATDWTPAPEDVQAEINAVKAKADQLDNLGTMAWQNSVEKAMLGSTVVQGGYIKTELLNASAIVSNGGGATTSQLNSAISSIVVGGRNYLRGSQKGYGMFNNNGRTLGLTQGEENGVRWVSGASVNNGNFYISTYFHLLNNLSVFTENLTGQKTIQSMEVKPTHDMYIGLWENNRKFCPANVWTKIENSPYNNTRFIGIYAIWNNDGSVPATAKIYHRNWKLEKGNKATDWTPAPEDLDTLFANLQQGISNMQTSLSDVKNKTDNFSSIQGGLMMANLMSVGSNQANQNAFISGITDEGAMSVRFGAGSNYANKNNAPFRVLDNGKMIAQDADITGRITATGGNIGEWEINGSSFRSSSIGSNDSWAQYSSYAFFSPETFLIRKNGSERGETKEVMMGITSSISTGSEGATAAIKSNIKKTQYDFDRDNVALRLEAKNGVTNTALDILNGDIRVGGEVGYTGELFLGGVWLTIRKGIITNYS
Physico‐chemical
properties
protein length:1335 AA
molecular weight: 149436,33240 Da
isoelectric point:5,49471
aromaticity:0,10637
hydropathy:-0,47146

Domains

Domains [InterPro]
DC_0279
STR
9–926
DC_0279
IPR007119
Unmapped
135–260
IPR007119 DC_2057
XMN71877.1
1 1335
Architecture
STR
STR 9-1106 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XMN71877.1
1 1335
Domain Start End Length (AA) Confidence
N-terminal 1 729 729 0,9378
Central domain 730 939 211 0,4898
C-terminal 940 1335 395 0,2969
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-729
Central
730-939
C-terminal
940-1335

Taxonomy

  Name Taxonomy ID Lineage
Phage Riemerella phage PJA1
[NCBI] 		3390497 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Riemerella sp.
[NCBI] 		2382126 cellular organisms > Bacteria > Pseudomonadati > FCB group > Bacteroidota/Chlorobiota group > Bacteroidota

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XMN71877.1 [NCBI]
Genbank nucleotide accession
PQ820058 [NCBI]
CDS location
range 44007 -> 48014
strand -
CDS
ATGGAGTTTATAGTCATACAAGGAGATAAGACCCTTAACCTTAATAATAGAAAACCTTTATGTTCGGTTACCAAAGCCGAACATAGACAGTCTTTGTTATCAGAAGATGTAATAAATATTACTGTAGAAAGTAAAACTCCTCTTGCTTTGCAAGTGGGCAACTATATAGAATATGAGAACCGAAGATATACACTCAACTCTGCACCAAAGGTAAAAAAGGAGCAGGGGTATTATACCTATGATTTAGTTTTTGAGGGCGTACAGTATCTATTGAGAGATAAGGTGTATTTCAACTTGGACGCTCAAGGCTTCCAAAATACGGCGGATTTTCCTTTAACGGGAGAAATAAACATTTTCCTTACGACGCTAATCACAAATATCAATTCCATTTCAGATTTTACTTGGGTTTTGGGTGAATATCCACAAAATACGGAAACTAAAACGCTGACTTTTAATAATGAAAACTGTTTAGCGGTTTTACAAAAAATATGTCAGGAATACGATACCGAGTTTGAAATCAAGCAGGATTTAGAGAGAAAATCTTACACGCTCAACATTAAGAAGATAGGCGAAACTTTAAACCAAACCTTTGAATATGGAAAAGGAAATGGGCTTTATTCTTTAAGTAGAGAAAATGCGAATGATAATGTGGTTACTCGGCTTTATGTTTTCGGTTCAACGAATAATATCAAAAGTGGATACCGGGATTATTCACAGCGTTTGCGGTTGCCTATTTCTCACGGAAAGGATTATATTCAGGACGATGCTAAGGTAAAATTGTTCGGCTTAAAAGAGGGCGTTAAAAATTTTGACGACATCAAACCTACTTTTAAGGGGATAGTATCAGGCGTTACCAATTTGGAAAACGGCTCGCAAGAGATAGAGGTTTCTAATATGGACTTTGACCTGAACGAAACTGACAGCAACGGAACAAAGTATTTATTAAACGATACTCCCGCGAAGCTCCATATAAACAAAGGAAATTTAGCAGGATATGAGTTTGAAATACTTAAAAATGGAGGCTACAACCACGCCACTAAGGCTTTTAGAGTAAAGCAATTTACAGACGAAAGAGGACAAAAGTTTCCAGAAGCAGGTTCTGTGTTTTCATTTGCGGTTGGAGATGAGGTTACCTTGTTGGATATTGCTCTACCTGAACAGTACATTACTAATGCCGAAAACAAGCTCTTCGAAGAGGGACAAAAGGAATACGAAAAACAGTCGGTAAACAATCTTAAATATAATTTAGAGTTAGACCCTCTGTATCTTCAACAGATAGGGGCTAGTACATCTATTTTCTTTAAAATAGGGGATTATATCCGTGTGATAGATGAGCCTCTTAAAATAGACAAAACGACACGCATAGTAGATATTACGAGGGACTTATTAGATGAATATAATTACAAAATAGGCATTGCGGATACTTACGAAATCAGTTTTGTAGCAAGTCTGCTTACCGATATTAAAGATACCAAAACGGTTATAAAAACGCAGGAGCAAATTAATAGACGAAACTATTTAAACGGTTATCGTAACCTGCAAGAGCTTCGAGAAAGTGTCTTTGATGTAGAAGGATACTTTGACCCTACACATATCAAGCCAGAGAGTATAGAAGCCAATATGCTTTCGGTTGGAGCAAAGAGTCAACAATTTGCATTAGAAAATATAAGTCTGAATCCTAATATAGAGGGTAATCCTGCAAGAACATTTATTAGCGGTGGGAAATTGATTCATTTTTCCTTAGAAGACGATATTAGAGAATGGAACATATTGCCATACAGCCGTAATGACCTGTTAAATCAAGTTTACTATGTCTATGCAAAATGCTCAAGAGGGAATAGTATGGGGGTGTGGCATATTACCACCGAGCAAATAAAATTTGATAGTCGGTCAGATTATTATTACTTCTTGTGTTACTTACTCTACACACCAAAAGACGGTAAACGAGAAGCAGAATCAATGTACGGTAATGTGTTTATGCACGGAGGGCAAATAACGGCAGGAAGAATTAAATCTCTCAATGGTCAAACCTATTTTGATTTAGACAATGGGGAAATAGCAGGAACGATTAAGTTTAAAAGCGGTAATGGTTATGCGGAAGTTGGGAGTGCTATACAACAAGCGGTGGATGCGGTAAGTGTAGGAGGTAGAAATTTAGTGAGAGAATCCAATGTTTTTAGAAATGGTATATCGGCGGACGGAATAGGTAGTAATATAACTTCAGAAGGATACTTGAGGGTTATTAGCTCAATTTCAAATAACAATTGGCATACAAGATGGTATTCAAGAACAGATGAAATAGAGGAGCAAATGACAGAAGGCGAAGCCTTCACTATTACCTTTTGGGTGAAAAGGTTGAGTGGCTATGGCAAGCCTACTATTTACCTGAAAGATGGAATGGGTTACTTTCATCTAAATGGCGAATTAAACAACTCCGAATTCAAGCCTCTAAGCTATACAGGAACTTGGAAAAAAGCCGAATCATTACACCCTCATTTAGGTTGGGCACCTGCAAATGGAGAATTTATCATTAAATGTTGGAAAATTGAAAAAGGTAACAAAGCAACAGATTGGACACCCGCTCCCGAAGATGTACAGGCAGAAATTAACGCTGTAAAAGCGAAAGCCGACCAATTGGATAACCTTGGTACAATGGCGTGGCAGAACTCGGTAGAAAAAGCGATGTTGGGTAGTACGGTAGTACAAGGGGGGTATATCAAAACAGAACTCTTAAACGCTTCGGCAATAGTGAGTAACGGCGGAGGGGCAACAACCTCACAATTGAATAGTGCCATCAGTTCAATAGTAGTTGGTGGTAGAAATTACCTTAGGGGTTCTCAAAAAGGATACGGAATGTTCAACAACAACGGAAGAACATTGGGTTTAACACAAGGAGAGGAAAATGGAGTGAGATGGGTTTCTGGAGCAAGTGTGAATAATGGTAATTTTTATATTTCTACCTATTTTCATTTACTCAATAATCTAAGTGTATTTACAGAAAATCTTACAGGTCAGAAAACTATCCAATCAATGGAAGTGAAGCCCACTCACGATATGTATATAGGTCTTTGGGAGAATAATAGAAAATTTTGTCCTGCGAATGTTTGGACGAAGATAGAAAATTCTCCATATAACAACACTCGTTTTATAGGCATATATGCGATATGGAATAATGACGGAAGTGTTCCTGCAACTGCAAAAATTTACCACAGAAATTGGAAGTTAGAGAAAGGTAACAAAGCTACCGATTGGACGCCTGCACCAGAGGATTTGGACACACTATTTGCTAACCTGCAACAAGGGATAAGCAATATGCAAACCTCTTTATCTGATGTAAAGAATAAGACAGACAACTTCTCCTCTATACAAGGCGGATTGATGATGGCTAACTTGATGTCAGTCGGAAGCAACCAAGCTAATCAAAACGCTTTTATTTCGGGAATAACCGACGAGGGAGCAATGAGCGTGAGATTTGGAGCAGGGTCTAACTATGCAAATAAAAATAATGCTCCGTTTAGGGTACTGGATAACGGAAAGATGATTGCCCAAGATGCGGATATTACAGGGAGAATAACAGCCACAGGTGGAAATATAGGAGAATGGGAAATAAACGGCTCTTCTTTTAGGTCTTCTAGTATTGGAAGCAACGACTCGTGGGCTCAATATTCGAGTTACGCATTTTTTTCTCCAGAAACTTTTTTAATCAGAAAAAATGGCTCGGAGCGAGGAGAAACTAAAGAAGTGATGATGGGTATTACATCTAGTATATCCACGGGGTCAGAAGGAGCTACTGCTGCAATAAAAAGCAACATAAAAAAAACTCAATACGACTTTGACAGAGATAATGTGGCACTAAGACTAGAGGCTAAAAATGGGGTTACAAATACCGCTTTAGATATTTTGAATGGAGATATTCGTGTGGGTGGAGAGGTAGGATATACAGGAGAATTATTTTTGGGGGGAGTATGGCTTACCATTAGAAAAGGTATAATAACAAATTATTCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f4b95839b506008620f5445f0d0b48d55e11450b5784e0e6a308ae8602c74c92
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7868
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50