Protein

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Genbank accession
YP_009829546.1 [GenBank]
Protein name
distal tail protein Dit
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,84
Protein sequence
MKQAGMTITYAGVDITQWMYVQMVNRDVGTNHVNTMQKVGISDGQMLQYMSRDVKTIVVTGIVMNDDLVPLRRSLAAAIDTDEPQQLIFGDEPDKYYLAIVDSQPTFTEGFRSGTISISFICPDGGIAHSVATQTFDNMPYKDVPVNLITGTSDKLAVTTLYGWGEHVFGSIVPETNTNYCFKVWIDNPTFDACAKLDCSDSSGSQIVWAQGNTVSAGTSGYSIVKVTPDSKYANIKCQTVYTFNHGASASGSYGYKEAKLEVGSAPTPWSPNPADPEYYTNTITVHNGGTYPVEPVITATMHADNGFLGFANSQGGVLQFGNPEEIDGYTSEESEVALNLAAVQGSHMDNQAASNNLYWGDNPATPNEQIGNAIWTQDSYDGWKVEPNWPSITGDHKYWNGPSIKHNLAQTHNGNFKSNLTWDVMTRFQTGVSQVGSLETTLESDGKPIFQMILKDNSALSDQIWWMCYYKNQLVVNEQLDRNIFTNDKFIQLELQKFGNSVVFRVSPWVGNRGRETTITRQFTFADAASVETKQFSAWFMRDKTWGESTMYLIASTIKWQNVSWYTDIKNRFSNGDVITVDVANTKTYFNGSEDRTLHTLGNQWDKFLLPPGDTIIQLMPSSWAQPFECEVGLKEAWL
Physico‐chemical
properties
protein length:640 AA
molecular weight: 71220,59000 Da
isoelectric point:4,76552
aromaticity:0,11406
hydropathy:-0,36547

Domains

Domains [InterPro]
G3DSA:2.40.30.200
ATT
1–125
G3DSA:2.40.30.200 DC_0420
DC_0077
STR
1–150
DC_0077
IPR006520
Unmapped
9–125
IPR006520
IPR008841
STR
32–122
IPR008841
YP_009829546.1
1 640
Architecture
ATT
STR
STR
ATT 1-125 | STR 126-150 | STR 219-640
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009829546.1
1 640
Domain Start End Length (AA) Confidence
N-terminal 1 156 156 0,9564
Central domain 157 370 215 0,5529
C-terminal 371 640 269 0,4210
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-156
Central
157-370
C-terminal
371-640

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactobacillus phage T25
[NCBI] 		2036055 Uroviricota > Caudoviricetes > Sukhumvitvirus >
Host Lactobacillus paracasei
[NCBI] 		1597 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009829546.1 [NCBI]
Genbank nucleotide accession
NC_048625 [NCBI]
CDS location
range 28188 -> 30110
strand -
CDS
TTGAAACAAGCAGGCATGACCATCACATACGCCGGAGTAGATATTACCCAGTGGATGTATGTGCAGATGGTAAATCGTGATGTAGGAACTAATCACGTCAACACAATGCAAAAGGTCGGCATCAGCGATGGTCAGATGTTGCAATACATGTCACGGGACGTCAAGACGATTGTGGTAACTGGAATTGTTATGAATGATGATTTGGTACCACTAAGACGTTCCTTGGCCGCTGCTATTGATACGGACGAACCACAGCAGCTAATCTTTGGGGATGAGCCGGACAAATATTATCTTGCCATCGTAGACAGTCAGCCTACCTTCACCGAAGGCTTTCGATCAGGGACAATCTCTATCAGTTTTATCTGTCCAGATGGTGGCATCGCGCACTCGGTAGCCACGCAGACGTTTGACAATATGCCATACAAGGACGTGCCGGTGAACCTTATTACAGGTACAAGTGACAAGCTAGCAGTAACAACGCTATATGGCTGGGGTGAACATGTTTTTGGTAGTATCGTACCAGAAACAAATACAAACTATTGCTTCAAAGTATGGATTGACAATCCCACTTTTGACGCATGTGCAAAATTGGACTGTTCAGACTCAAGTGGCAGTCAAATTGTATGGGCACAAGGCAATACTGTATCAGCCGGTACTAGTGGATACAGCATTGTCAAAGTGACACCAGACAGCAAATATGCAAATATCAAGTGCCAAACGGTTTACACATTTAACCATGGTGCTTCAGCATCTGGATCATATGGATACAAAGAAGCAAAGCTGGAAGTGGGTAGTGCCCCAACTCCATGGTCACCTAACCCAGCGGATCCTGAATACTATACCAACACCATCACGGTTCATAATGGTGGCACTTACCCTGTCGAGCCAGTTATTACGGCAACTATGCATGCAGATAACGGCTTTCTAGGATTTGCCAATAGTCAGGGTGGCGTACTTCAATTTGGTAACCCTGAAGAAATTGATGGCTATACAAGTGAAGAAAGCGAAGTGGCCTTGAATTTGGCAGCCGTTCAAGGCTCGCACATGGATAATCAAGCTGCTTCCAATAATCTTTACTGGGGAGACAACCCAGCTACGCCAAATGAACAGATTGGTAATGCGATTTGGACGCAGGACAGCTATGATGGCTGGAAGGTTGAGCCTAATTGGCCCAGCATTACTGGCGATCATAAGTATTGGAATGGGCCTTCAATCAAACACAACCTTGCTCAGACACATAACGGTAACTTTAAGAGCAATCTAACTTGGGACGTCATGACACGTTTTCAAACTGGTGTCTCACAGGTTGGTTCACTCGAAACAACCTTAGAAAGTGACGGCAAGCCAATCTTTCAGATGATACTGAAAGACAATAGTGCACTGTCTGACCAAATATGGTGGATGTGTTACTACAAAAATCAACTAGTCGTCAATGAACAGTTGGATCGCAATATCTTCACTAATGACAAGTTCATTCAGCTGGAATTGCAGAAATTTGGTAATTCAGTTGTTTTCCGGGTGTCACCATGGGTTGGCAATCGAGGACGAGAGACGACTATTACCCGTCAATTTACTTTTGCGGACGCTGCTAGTGTCGAGACTAAGCAATTTTCAGCATGGTTTATGCGAGACAAGACATGGGGCGAGTCGACTATGTATCTAATTGCGTCTACCATTAAATGGCAGAACGTAAGCTGGTATACAGATATTAAGAATCGCTTCAGCAATGGCGATGTAATTACGGTTGATGTGGCTAATACCAAAACTTATTTCAATGGCAGTGAAGATCGTACCTTGCATACATTAGGCAACCAGTGGGACAAGTTTCTTTTACCGCCCGGAGATACCATCATTCAGCTCATGCCATCAAGCTGGGCACAACCATTTGAGTGTGAAGTTGGTTTGAAGGAGGCATGGCTGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3db3e2999393add98628250ae7b7f79a2684cc6247c479ca86cf661cd0537228
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8249
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome analysis of the Dairy Lactobacillus paracasei phage T25 Sunthornthummas,S. 2019-05 — GenBank