Protein

View in Explore
Genbank accession
YP_010064618.1 [GenBank]
Protein name
tail protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MTKNVISGSKGGSSKPYTPKEMEDNLISINKIKVLLAVSDGECDPNFSLKDLYLNDVPVMNEDGSLNYQGVTAEFRPGTQDQPYIQGFTDTASEITVARDITTTTPFVIPVTNRNLSAIRIKMLMPQGVKVESNGDRVGVEVKYKVEMAVDGGSYKEVLADTFTGKTTSGYDRSRRIDLPEFNDQVLLRVSRVTPDSTTDRVVDGIRIQSYAEVIDAKFRYPLTGLVYVEFDSELFPNQIPNISIKKKWKIINVPSNYDPESRTYSGTWNGTWKKAWTNNPAFILYDLITNQRYGLDQRELGIPLDKWSIYEAAQYCDQMVPDGKGGTEPRYLCDVVIQSQIEAYQLVRDICSIFRGMTFWNGESLSIVVDRPREPSYIFTNDNVVNGDFSYTFASEKTMYTQCNVTFDDEQNMYQQDVEGVFDVEASLRFGHNPTSITAIGCTRRSEANRRGRWILKTNLRSTTVNFATGLEGMIPSIGDVIAIADNFWSSNLTLNLSGRLMEVSGLQVFVPFKVDARAGDFIVVNKPDGKPVKRTISRVSADGKTLELNVGFGFDVQPDTVFAIDRTDIALQQYVVTTITRGDNEEEFTYSITAVEYDPNKYDEIDYGVNIDDRPTSIVQPDVMAAPENVVVSSYSRIVQGLSVETMHISWDKVPYASLYEVQWRKDNGNWHNVPQTANKETEVEGIYAGVYHVRVRSVSAAGSASPWSAIVTASLTGKVGEPGKPINLTASDNEVFGIRIKWGMPEGATDTAYVELQQAPNAGDLPAEDQASLLSLIPYPQHEYWHSILPAGFINWYRVRSVDKIGNVSGWTDFVRGMASTELDDILGDILDDIWNSPGGEAIKESAIDNANKIKDQAQSIIHNALANDADIKWTRKENGKRKAEYGHALELIANETEARVTAIEELKASIGDDIQGQITTIKEAVANEEEARVKAVQNLDAKFTKEVEGVRTETAASIGRVDQAITNEAEARAQAVSSLDSKFTGQINGVKQDLTSNISRVDQAIANEASARASADTALSTRVGNAESAISQKLDSWITASGAGAQYALKLGLTYQGKQYDAGMVLSLTGSGSAVKSQVLFDAARFGILTKVGGAYSLPFVVENNQVFINSLLVKNGSITNAMIGNEIKSNNYVAGQTGWRLDKNGNLEINGKTGTGRLTINNNLIQIYDANNRLRVRMGLW
Physico‐chemical
properties
protein length:1186 AA
molecular weight: 130839,05080 Da
isoelectric point:4,95672
aromaticity:0,08432
hydropathy:-0,33887

Domains

Domains [InterPro]
DC_0014
STR
1–1186
DC_0014
IPR053171
Unmapped
3–882
IPR053171 IPR015406
IPR055385
ATT
92–217
IPR055385 IPR032876 IPR036116
IPR013783
STR
627–720
IPR013783
IPR003961
STR
628–722
IPR003961
IPR003961
STR
628–716
IPR003961
YP_010064618.1
1 1186
Architecture
STR
ATT
STR
ATT
STR
STR 1-91 | ATT 92-217 | STR 218-340 | ATT 341-488 | STR 489-1186
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010064618.1
1 1186
Domain Start End Length (AA) Confidence
N-terminal 1 505 505 0,9029
Central domain 506 1135 631 0,0404
C-terminal 1136 1186 50 0,7686
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-505
Central
506-1135
C-terminal
1136-1186

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vB_EcoS_PHB17
[NCBI] 		2591407 Uroviricota > Caudoviricetes > Drexlerviridae > Baihuvirus > Baihuvirus PHB17
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010064618.1 [NCBI]
Genbank nucleotide accession
NC_054892 [NCBI]
CDS location
range 25055 -> 28615
strand +
CDS
ATGACAAAAAATGTGATAAGCGGCAGTAAGGGCGGCTCCTCAAAACCTTACACACCAAAGGAAATGGAAGATAACCTAATCTCCATTAACAAAATCAAAGTTTTGTTGGCTGTTTCAGATGGTGAGTGCGATCCTAATTTCTCACTGAAAGATCTGTATTTGAATGATGTTCCGGTGATGAATGAGGATGGTTCATTGAACTATCAAGGCGTGACCGCAGAGTTTCGACCAGGCACGCAAGATCAGCCATATATCCAGGGTTTCACAGACACAGCAAGCGAAATAACCGTTGCGCGTGACATTACCACTACAACGCCTTTTGTAATTCCAGTTACAAACCGCAACCTTTCTGCAATCAGAATTAAAATGCTGATGCCGCAGGGCGTTAAGGTTGAGAGTAACGGCGACCGCGTAGGCGTTGAAGTAAAATACAAAGTTGAAATGGCTGTTGATGGCGGAAGCTATAAAGAAGTTTTAGCCGACACATTCACAGGCAAAACAACAAGCGGATATGATCGCAGTCGTCGAATTGACTTACCAGAATTCAACGATCAAGTTTTGTTGCGCGTTAGTCGTGTAACGCCTGACAGCACAACTGATCGCGTTGTTGATGGAATCAGGATTCAGAGCTATGCGGAAGTAATCGACGCGAAGTTTCGTTATCCGCTGACTGGTTTAGTTTACGTTGAATTTGATTCCGAGCTATTCCCGAATCAGATCCCTAACATTTCTATCAAGAAGAAATGGAAGATAATCAACGTTCCGAGCAACTACGATCCAGAATCGCGCACGTATAGCGGCACATGGAATGGCACATGGAAAAAGGCATGGACAAACAACCCTGCTTTCATTCTGTATGATTTGATCACCAATCAGCGCTATGGACTAGATCAAAGGGAGTTGGGAATTCCACTGGACAAGTGGAGCATTTACGAGGCCGCGCAGTATTGCGATCAGATGGTTCCAGATGGAAAGGGCGGAACGGAACCGCGCTACCTTTGCGACGTTGTTATTCAGAGCCAGATTGAAGCCTATCAGCTTGTTCGCGACATTTGCTCTATATTCCGTGGCATGACGTTTTGGAACGGCGAAAGCCTTTCGATTGTGGTTGATAGACCGCGCGAGCCGTCTTACATCTTCACAAACGACAACGTTGTTAATGGTGATTTTAGCTACACTTTCGCCAGCGAAAAGACGATGTACACGCAATGCAACGTGACATTCGACGATGAGCAAAACATGTACCAACAGGACGTTGAGGGCGTTTTTGATGTAGAGGCTTCATTACGTTTCGGGCATAACCCAACGAGCATTACAGCCATTGGATGCACTCGACGCAGCGAGGCAAACCGCCGTGGGCGCTGGATTCTGAAAACCAACTTGCGCAGCACAACGGTTAACTTTGCAACTGGTCTGGAGGGCATGATCCCATCTATCGGGGATGTGATCGCGATTGCGGATAACTTCTGGAGCAGCAACTTAACGCTGAATTTATCAGGTCGTTTAATGGAGGTTTCCGGTTTACAGGTTTTCGTTCCGTTTAAGGTTGATGCACGCGCTGGTGATTTCATCGTGGTTAACAAGCCAGATGGCAAGCCAGTAAAGCGCACCATATCAAGGGTTAGTGCAGACGGTAAAACGTTAGAGTTAAACGTTGGGTTTGGTTTTGACGTTCAGCCTGACACCGTGTTTGCTATCGACCGCACTGATATTGCATTGCAACAGTATGTTGTAACAACCATCACCAGGGGCGATAACGAGGAGGAATTCACCTACTCTATAACGGCTGTTGAATACGATCCGAACAAGTACGATGAAATTGATTATGGCGTGAACATTGACGACCGCCCAACAAGCATTGTGCAACCTGACGTTATGGCAGCACCGGAAAACGTTGTTGTGTCGTCATACTCGCGAATCGTGCAGGGCTTGAGCGTTGAAACGATGCACATTAGTTGGGATAAAGTGCCTTACGCATCGCTGTATGAGGTGCAATGGCGCAAGGATAATGGCAACTGGCATAACGTACCGCAGACAGCCAACAAGGAAACAGAGGTTGAAGGTATTTATGCGGGGGTTTATCACGTTCGCGTGCGTTCAGTTTCGGCGGCTGGTTCGGCTTCTCCCTGGTCTGCGATTGTCACCGCTTCTCTGACTGGTAAAGTTGGCGAGCCTGGCAAACCGATAAACCTTACGGCGTCAGATAATGAGGTTTTCGGAATTCGTATTAAATGGGGTATGCCAGAAGGTGCAACCGATACGGCTTACGTTGAATTGCAGCAAGCGCCTAATGCTGGTGATTTACCAGCAGAAGATCAAGCGTCGCTGTTGTCTTTGATTCCGTACCCACAGCACGAATATTGGCACAGCATTTTGCCAGCAGGTTTTATCAACTGGTATCGTGTGCGATCTGTTGACAAAATCGGCAACGTTTCCGGCTGGACTGACTTTGTGCGCGGAATGGCTTCAACTGAGCTTGATGATATTTTAGGCGATATTTTAGACGATATCTGGAATTCACCAGGCGGCGAGGCAATCAAGGAAAGCGCGATTGATAACGCGAACAAGATCAAGGATCAGGCGCAAAGCATCATTCATAACGCGCTCGCAAATGATGCGGATATTAAATGGACGCGCAAAGAGAACGGCAAGCGTAAAGCGGAATATGGTCACGCACTGGAGTTAATCGCCAATGAAACAGAGGCGCGAGTAACAGCCATTGAGGAACTAAAGGCAAGCATTGGTGACGATATTCAAGGACAGATCACAACCATCAAGGAAGCGGTTGCAAATGAGGAGGAGGCGCGAGTAAAAGCAGTTCAAAACCTTGATGCGAAATTTACGAAAGAGGTTGAAGGTGTTAGGACTGAAACCGCCGCCAGTATCGGCAGGGTTGACCAGGCGATCACGAATGAAGCAGAGGCAAGGGCGCAAGCCGTTAGCTCACTTGATTCTAAATTCACTGGACAAATCAACGGCGTTAAGCAAGATTTGACGTCTAACATTAGCCGAGTGGATCAGGCAATTGCGAATGAGGCTAGCGCGAGGGCTTCCGCTGACACGGCGTTAAGCACGCGAGTTGGCAACGCAGAAAGCGCGATTTCACAAAAACTTGATTCATGGATCACTGCGAGCGGAGCGGGTGCGCAATATGCGTTGAAATTGGGATTGACTTACCAGGGCAAACAGTACGATGCGGGAATGGTGCTATCACTGACCGGAAGCGGGAGCGCTGTAAAATCACAAGTGCTTTTCGATGCGGCGCGGTTCGGCATTCTAACCAAAGTCGGCGGGGCTTACTCATTGCCTTTCGTGGTTGAAAACAACCAAGTATTCATTAACAGTTTGTTGGTGAAAAACGGCTCAATCACTAACGCTATGATTGGTAACGAGATCAAATCAAACAACTATGTTGCAGGGCAAACCGGATGGAGGCTGGATAAAAACGGCAACCTGGAAATCAACGGCAAGACCGGAACCGGACGCTTGACCATCAACAACAACCTGATCCAGATTTATGACGCAAACAACAGATTGCGCGTAAGAATGGGATTGTGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ef0d0e2e9f89e98bcbe3e7ac64ce0ef66f17d3211a90f0c2826c131a6b5242a0
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7646
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of the virus isoalte vB_EcoS_PHB17 infecting Shiga toxin-producing Escherichia Chen,Y., Qian,P., Song,J. and Li,X. 2019-09-17 — GenBank