Protein

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Genbank accession
YP_009785042.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 0,98
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MAAPTTVKVYPLDDVSRDFPVDFDYLAREFVVVTLLGNDRRELIQNSEYTFQTSTSIRTTETWGPTNGGYDNIEVRRVTSATERLVTFNDASILRASDLNLAELQTVHIAQEARDLVSDSLGVDDDGNLDARNRRIVNLGNPIDPQDAMTKEYYDSRVGETKDARDAAIAARDKAQQWATQLATPVEGADLSAKQYALNAKASENAAEADRATVAADKATVAADKATVAADKAIVAADKATVAADKATVAADKATVATDRASVESTAANVLQIEQNAQDAIDIANTFDTRLTAAETDADNAVTTANAAAAAAAGKMSADGSVPMSGSLRINTNNVENATVTLDADPGVYKGLLFRTDDKNRWTVYTNSEAETGAEAGSNFVVDRYKDDGTWTATVLNISRKTGNIVSTGGLTFADAALASDGYGQTRIKYGNYGTFWRQDGVNLYLMGTNSGNQAGGWNDYRPFMFNVTNGEVKINEGGHGGGTMMGYRLRIENRFGNSGEIQLRANDGYNFHMRGRNGAGMEWVNHEYNAVVAFMLNNGEFYFGTQGARLAVDGNVYMPMRGQWLNDALNSKVGVANCQWNSFVEERGPISSTYDAPAPQVLMGVRGGSGSATANFIFIRSVWIRNF
Physico‐chemical
properties
protein length:628 AA
molecular weight: 67696,81600 Da
isoelectric point:4,78194
aromaticity:0,08280
hydropathy:-0,38774

Domains

Domains [InterPro]
DC_0264
STR
2–181
DC_0264 IPR048390 DC_2017
IPR005604
ATT
4–131
IPR005604 IPR048390
DC_1611
STR
130–361
DC_1611
YP_009785042.1
1 628
Architecture
ATT
STR
ATT
RBD
ATT 2-131 | STR 132-361 | ATT 376-470 | RBD 570-628
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009785042.1
1 628
Domain Start End Length (AA) Confidence
N-terminal 1 322 322 0,9880
Central domain 323 521 200 0,0921
C-terminal 522 628 106 0,9290
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-322
Central
323-521
C-terminal
522-628

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage phiITL-1
[NCBI] 		1597967 Uroviricota > Caudoviricetes > Autographivirales > Serkorvirus > Serkorvirus ITL1
Host Ralstonia solanacearum
[NCBI] 		305 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009785042.1 [NCBI]
Genbank nucleotide accession
NC_047751.1 [NCBI]
CDS location
range 8017 -> 9903
strand +
CDS
ATGGCTGCACCAACAACCGTGAAGGTCTATCCGCTGGACGATGTTTCCCGGGACTTCCCCGTGGACTTCGACTATCTGGCCCGAGAGTTCGTCGTGGTGACCCTTCTGGGGAATGACCGGCGCGAGCTTATCCAGAACAGCGAGTACACCTTCCAGACCTCGACCAGCATCCGGACCACGGAAACGTGGGGTCCGACCAATGGCGGGTACGACAACATCGAGGTCCGCCGCGTGACCAGCGCAACCGAGCGGCTGGTGACGTTCAACGATGCCTCGATCCTGCGCGCCTCCGACCTGAACCTCGCGGAACTGCAAACCGTGCATATCGCACAGGAAGCCCGCGATCTGGTCTCCGACTCGCTGGGCGTGGATGACGATGGCAACCTCGACGCGCGCAACCGCCGCATCGTGAACCTCGGCAACCCAATCGACCCGCAGGACGCGATGACCAAGGAGTACTACGACTCCCGCGTTGGCGAGACCAAGGATGCCCGCGATGCTGCCATCGCCGCACGCGACAAGGCGCAGCAGTGGGCCACGCAACTCGCCACCCCGGTGGAGGGGGCAGACCTGTCCGCGAAGCAGTACGCCCTGAACGCCAAGGCGTCAGAGAACGCCGCCGAGGCTGACCGCGCGACTGTGGCCGCTGACAAGGCGACTGTGGCTGCCGATAAGGCGACTGTGGCCGCCGATAAGGCAATCGTTGCGGCCGATAAGGCGACTGTGGCCGCTGACAAGGCGACCGTGGCTGCCGACAAGGCGACCGTGGCAACTGATCGGGCGAGCGTGGAATCGACTGCGGCCAATGTGTTGCAGATCGAGCAGAACGCGCAGGACGCTATCGACATCGCCAATACGTTCGACACGCGCCTGACTGCTGCCGAGACCGATGCGGACAATGCGGTGACCACGGCTAATGCTGCGGCTGCTGCTGCGGCTGGGAAGATGTCGGCGGACGGCAGCGTTCCGATGAGTGGGTCGCTCCGCATCAACACCAACAACGTTGAGAACGCGACCGTGACGCTGGACGCCGATCCGGGCGTGTACAAGGGCCTCCTGTTCAGGACCGACGACAAGAACCGCTGGACCGTGTACACCAACAGCGAGGCCGAGACCGGCGCGGAAGCTGGCTCGAACTTCGTGGTGGATCGCTACAAGGACGATGGCACTTGGACGGCCACGGTGCTGAATATCAGCCGCAAGACCGGGAATATCGTCAGTACTGGCGGCCTGACCTTCGCGGACGCGGCCCTCGCTAGTGACGGATACGGACAGACCCGAATCAAGTACGGAAACTACGGCACGTTCTGGCGGCAGGACGGGGTGAACCTGTACCTGATGGGCACCAACTCGGGCAACCAAGCGGGTGGGTGGAACGATTACCGGCCCTTCATGTTCAACGTGACGAACGGCGAGGTGAAGATCAACGAGGGCGGCCACGGGGGCGGCACGATGATGGGCTACCGCCTGCGCATCGAGAACCGCTTCGGCAACTCCGGCGAGATTCAGTTGCGTGCGAACGATGGCTACAACTTCCACATGCGTGGCCGTAATGGCGCAGGCATGGAGTGGGTGAACCACGAGTATAACGCGGTGGTCGCCTTCATGCTGAACAACGGCGAGTTCTACTTCGGAACCCAAGGCGCCCGCCTCGCGGTGGACGGTAACGTCTACATGCCGATGCGTGGTCAGTGGCTAAACGACGCACTCAACAGCAAGGTCGGCGTGGCGAACTGCCAGTGGAACTCCTTCGTGGAGGAGCGCGGTCCCATCTCGTCTACCTATGACGCACCGGCACCGCAGGTCCTCATGGGCGTGCGTGGCGGCTCCGGTTCGGCCACGGCGAACTTCATCTTTATCCGCTCAGTGTGGATTCGCAACTTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
67ac7a48c014a18b6f0173460fef7ce350d53c8c46c22ad2d1be9cdfb38830f4
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7430
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic characterization of bacteriophage ITL-1, lytic for Rasltonia solanacearum Hernandez-Romano,J., Martinez-Barnetche,J., Tellez-Sosa,J.M., Gomez-Barreto,R.E., Teran-Leon,I., Serrano-Plancarte,R., Zavala-Padilla,G. and Estrada-Carrillo,M. 1977-01-01 — GenBank