Protein

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Genbank accession
YP_009845375.1 [GenBank]
Protein name
receptor binding tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MSFFAGKFSDGKTVLSLNAANGGDINQHYSPNTNSIFHSDMPFVLVDGTYEAALGDAGNGYFVTQMPWDIINIKSNDPGRVILTAIEINGTHRGFLNGTQSQVGQFLSFFEDQPRAGAELSVTSAFAIGDSLAHGTYIYNGGLGHEESIARQGSGGSLLQSSGFQIFRPGGVSAGEAISRAWGLMGFPTGVSTVPIDGGNADYWEPNWQAPIGSAGRGHDWFYVCSSNIRGFAGKKGVLPDNVNVLYQSPAYPEKIYVCRGSTSNMAAQSARKVYVQDWYNVTPTKVIWYVLNLRYSNGSMGISGNPFTGSDILISPSNFTIKGVSLPNSGYKFINQNAFGNLGYRPDMEYVGNNTAYTGVFGDNTARCEFIGSSNGGLWSPVNYGGAASQISLYKFGVGKQWYVDTNTNSIGNEHGPVWSPSTVPLRLFPGNVASTYVGDDITPSYPGAGDFYTPLATVWLGLPNAHSTVILTTEVIMGNLNTAGMPVRTYGGSAWQVQGRRQQSYTAGDGVFHQILTLPPGYLVPYHSTTSYSYTQTWASRPDEFAFRRNGYIYTIKNLGNGNVELGVIIHAAEAAAVFLPRLRVTVQRLT
Physico‐chemical
properties
protein length:593 AA
molecular weight: 63947,54360 Da
isoelectric point:6,41510
aromaticity:0,12479
hydropathy:-0,17858

Domains

Domains [InterPro]
IPR059609
RBD
1–593
IPR059609
YP_009845375.1
1 593
Architecture
RBD
RBD 1-593
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009845375.1
1 593
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,6828
Central domain 11 242 233 0,9232
C-terminal 243 593 350 0,6752
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-242
C-terminal
243-593

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage Sepoy
[NCBI] 		2565517 Uroviricota > Caudoviricetes > Demerecviridae > Epseptimavirus > Epseptimavirus Sds2
Host Salmonella enterica subsp. enterica serovar Heidelberg
[NCBI] 		611 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Salmonella > Salmonella enterica

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009845375.1 [NCBI]
Genbank nucleotide accession
NC_048760 [NCBI]
CDS location
range 110690 -> 112471
strand -
CDS
ATGAGTTTTTTCGCAGGAAAATTTAGTGATGGTAAAACTGTATTATCTCTAAACGCTGCTAATGGTGGTGATATAAATCAGCACTACTCTCCAAATACTAATAGTATCTTCCACTCAGATATGCCCTTCGTCCTAGTTGATGGGACTTATGAGGCTGCCCTAGGTGATGCAGGTAATGGGTACTTTGTTACTCAGATGCCTTGGGATATTATAAACATTAAATCCAATGATCCTGGTAGAGTTATATTAACTGCTATTGAGATAAATGGTACTCATAGGGGTTTCCTTAATGGTACACAATCTCAGGTTGGCCAGTTCTTATCATTCTTTGAAGACCAACCACGTGCTGGTGCTGAATTATCTGTAACATCTGCTTTTGCGATCGGTGATAGTTTAGCTCATGGTACCTATATCTATAATGGTGGTCTTGGCCATGAGGAATCTATTGCTCGGCAAGGTTCTGGAGGCAGTTTACTACAGTCCTCTGGTTTCCAGATCTTTAGACCTGGTGGTGTTTCTGCTGGTGAAGCTATTTCCAGAGCCTGGGGATTAATGGGCTTTCCAACGGGTGTATCTACAGTTCCTATAGATGGTGGTAATGCAGACTATTGGGAGCCTAACTGGCAAGCGCCTATCGGGTCTGCTGGTAGAGGTCATGATTGGTTTTACGTTTGTAGTTCCAATATTCGTGGCTTTGCCGGTAAAAAAGGTGTACTACCAGATAACGTAAACGTTCTTTACCAATCTCCTGCATACCCAGAAAAAATATATGTTTGTAGAGGTTCTACTTCTAATATGGCTGCTCAGTCAGCTAGAAAGGTATATGTGCAAGACTGGTATAATGTTACACCTACTAAAGTTATTTGGTATGTGCTAAATCTACGCTATTCTAATGGTAGTATGGGGATTTCTGGTAATCCATTTACTGGTTCAGATATCCTGATATCTCCATCTAACTTTACTATTAAAGGTGTTAGCTTACCCAACTCAGGCTATAAATTTATTAACCAGAATGCTTTTGGAAACTTAGGTTATCGCCCTGATATGGAGTATGTTGGTAATAATACCGCGTATACCGGAGTTTTTGGTGATAATACTGCACGATGTGAATTTATCGGCTCTAGTAATGGGGGTTTGTGGTCTCCTGTTAACTATGGGGGTGCTGCTTCTCAAATTAGCCTTTATAAATTTGGGGTGGGTAAACAATGGTACGTAGATACTAATACCAATTCAATTGGTAATGAACATGGCCCTGTGTGGAGTCCTAGTACTGTACCTCTCAGGCTATTCCCAGGCAACGTTGCAAGTACTTATGTTGGTGATGATATAACTCCATCCTACCCTGGTGCTGGTGACTTCTACACACCTTTGGCTACAGTTTGGTTGGGATTACCAAATGCTCACTCTACTGTTATATTAACCACTGAAGTTATTATGGGTAACCTTAATACTGCTGGTATGCCTGTACGTACTTATGGGGGTAGTGCTTGGCAGGTACAAGGTAGACGTCAACAAAGTTATACAGCTGGTGATGGTGTATTCCACCAGATTCTTACTCTGCCACCTGGATATCTAGTACCTTATCACAGTACAACTTCCTATAGTTATACACAAACTTGGGCTAGTAGGCCAGATGAGTTTGCTTTCCGTAGGAACGGATATATTTATACTATTAAAAACCTTGGTAATGGCAACGTTGAGTTGGGTGTTATCATTCACGCTGCAGAAGCGGCAGCTGTTTTCTTGCCAAGACTACGTGTAACAGTTCAACGCCTAACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
289b435bbe657660465d04e8371ef7c1c6fe07c76ae18078f40ad6bddf2db8cc
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2711
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50