Protein

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Genbank accession
YP_007674326.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MAKIARFNGNVQAFASNQQAGERRVFGATDPTESDLLSDQLTPEFLRGWATVGASEFPPLEWFNALGFTSTQFVAYLHQAGIPEWNAEQEYHTGSITNYNGVTYSSSVNDNVGQNPSSSDSWINPTLKSIKARFKSVDKMKLLQSTIDGFVKIGDINDEDIVVETDSYYGELTPFLLAENRGSAKYILTTLDRARSLIGDVSWTPDGYRDHYLLGGVTHVALLMLDNSIKINAEQFGASPYVSASINDASIASAIKEAKTKSSYIYSCVVTLGRGKFQTEKPIILQPEPGTSQRLVGLKGMGCGATEIHKTTTETSGIAGHDVDAVVMEVPADGEDYAYFGDSGGFILTSSIAGVGYGFYAVNCPVSKRKDIQSNGRENGFYQDDCWMSYLDRIWAINSYDTGISILGGTSVTGRNLYADRSKVRGFNLRGLQYSNLHCSCDRTAADEATPGIAYNFELAKGLSGQFNVETNHGVEFKFQNSDGIDISGGRSFNSTPVASLTSKITCSSSTVKFSGFDWTDTIQNLTPAEKANYNLITRDTLSSVDFDSCVFSEDLDERFPRQLDVKFSGNVSSKPYESNNGITTHSLAINNSSFKRLCYVGNVGRFKLDIAICEDPSVDALYLPLNEQGLYAPSLSASAASPDDVMQWYQNGSVSIAKLQGFVQDGWLFVRPSNSGNNRTYHFKITSIPIF
Physico‐chemical
properties
protein length:692 AA
molecular weight: 75625,15900 Da
isoelectric point:5,02254
aromaticity:0,10694
hydropathy:-0,28772

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007674326.1
1 692
Domain Start End Length (AA) Confidence
N-terminal 1 244 244 0,9954
Central domain 245 559 316 0,9728
C-terminal 560 692 132 0,9558
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-244
Central
245-559
C-terminal
560-692

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VBM1
[NCBI] 		754074 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus RIMD 2210633
[NCBI] 		223926 Bacteria > Proteobacteria > Gammaproteobacteria > Vibrionales > Vibrionaceae > Vibrio

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007674326.1 [NCBI]
Genbank nucleotide accession
NC_020850.1 [NCBI]
CDS location
range 9533 -> 11611
strand -
CDS
ATGGCTAAAATAGCTCGGTTTAACGGTAATGTTCAAGCGTTCGCATCAAACCAACAGGCGGGTGAGCGTCGCGTTTTTGGCGCAACAGATCCAACAGAAAGCGATTTACTATCAGATCAGTTAACTCCGGAGTTTTTGAGAGGATGGGCTACAGTTGGAGCCTCTGAATTTCCACCGCTCGAGTGGTTTAACGCTTTAGGCTTTACGTCCACTCAGTTTGTAGCCTATTTACATCAGGCTGGGATTCCTGAATGGAATGCTGAGCAAGAATATCACACAGGCTCGATAACAAATTACAACGGCGTAACTTACTCATCATCTGTAAATGATAATGTAGGGCAAAACCCTAGCTCTAGCGATAGCTGGATAAATCCAACGCTAAAATCAATAAAGGCTAGATTCAAAAGCGTGGACAAAATGAAGCTATTGCAGTCTACCATTGATGGATTCGTAAAAATAGGCGACATAAACGATGAAGATATCGTCGTTGAAACTGATTCGTACTACGGGGAGCTAACTCCATTCCTTTTAGCTGAAAATAGGGGTTCAGCAAAGTACATATTAACAACACTAGATAGAGCAAGATCTTTGATTGGTGATGTTTCTTGGACTCCAGATGGATATAGGGATCACTACCTACTTGGGGGCGTAACGCATGTTGCGTTACTGATGCTTGATAATAGTATTAAAATTAACGCCGAGCAATTCGGAGCTAGCCCTTATGTATCGGCATCAATAAACGATGCGTCAATAGCTTCAGCAATTAAAGAGGCAAAAACAAAATCTTCATACATCTATTCCTGTGTTGTAACTCTTGGTAGGGGTAAATTTCAAACAGAAAAACCAATAATCCTTCAACCTGAACCTGGCACATCTCAGAGGCTTGTTGGTTTAAAGGGGATGGGTTGTGGCGCAACTGAAATCCACAAAACAACCACTGAAACATCCGGGATTGCTGGGCATGATGTTGACGCTGTCGTTATGGAGGTTCCAGCCGACGGAGAGGATTACGCTTATTTTGGTGATAGTGGTGGGTTCATTCTAACTAGCTCAATAGCCGGTGTTGGGTATGGATTTTATGCGGTAAATTGCCCTGTAAGTAAGCGCAAGGACATTCAATCAAATGGGCGTGAAAATGGATTTTATCAAGATGATTGTTGGATGAGCTATCTAGATAGAATTTGGGCTATTAACTCTTATGATACCGGTATAAGCATTTTGGGGGGCACGTCAGTTACAGGCAGAAATCTTTACGCTGACAGATCGAAAGTGCGGGGGTTTAATCTGCGCGGGCTTCAGTACTCTAATTTGCACTGCTCATGTGATCGAACGGCTGCTGATGAAGCAACGCCAGGTATAGCTTATAACTTTGAGCTTGCAAAAGGTTTAAGTGGTCAATTTAATGTTGAAACCAATCACGGCGTTGAGTTTAAATTCCAAAATAGTGATGGTATCGATATATCTGGCGGAAGAAGCTTTAATTCAACACCAGTTGCATCACTTACAAGTAAAATAACATGCTCATCTTCAACCGTTAAATTTTCTGGTTTTGATTGGACTGATACCATACAAAATCTAACGCCTGCGGAAAAAGCAAATTACAACTTAATAACCCGCGACACTTTATCATCGGTTGATTTTGATTCTTGTGTGTTTAGTGAAGATCTTGACGAAAGATTCCCTAGACAATTAGATGTTAAATTTTCTGGCAATGTATCATCAAAACCTTACGAGAGTAATAACGGAATAACTACACACTCATTAGCAATAAACAACTCATCATTTAAGCGGTTGTGTTATGTTGGTAACGTAGGAAGGTTTAAACTTGACATTGCCATTTGTGAAGATCCAAGCGTTGACGCACTATATCTACCTTTGAATGAGCAAGGGTTGTACGCACCAAGTCTAAGCGCATCGGCAGCAAGTCCAGATGATGTTATGCAATGGTATCAGAATGGCAGCGTTTCAATCGCAAAACTTCAGGGTTTTGTTCAGGACGGGTGGTTATTTGTTAGACCTAGCAACTCTGGTAATAATCGAACTTATCACTTTAAAATAACGTCAATTCCTATATTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
59d8f5136c9784630282ce0d3b44141071e39375cdea11f151d2884747aa9668
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6575
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Vibrio phage VBM1 Henn,M.R., Wharam,S., Gilg,I., Martinez Martinez,J., Wilson,W., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Fitzgerald,M.F., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank