Protein

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Genbank accession
YP_008060782.1 [GenBank]
Protein name
tail fiber protein proximal subunit
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,58
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MVAKSFRATSGLDAAGEKVINVGKASRSVLSDGVNVDFFNEFNTVQQYDPDRGYSAYMAIIYARRIWYARADIASPAGAFDETKWISTRNDPKWVYNNVTSVDGLPVESGTYLMADGRFSELTYVLPDSPVEGDIVTIKDGGGMVGVNSMLVRSNTRQIRLRDAQSSSYRLTHPYMTVAFIFNGNLWRVSEMRDNRDSQFVNATGAGSFQMQSGMVTFRNSGTGKITLQLPKYANDGDSITTYDLDKLSSVNVATLQVYPNSGHTITYDSINGVTSVASQRSGYGIFIFDQTNNRWVVYDGDNRVRLRRISDDLNMLPNDYVFVTPIAGNPPTVRNVTLTLPQDVAEGDRVYISMYMMGKTQNCTIKVKDGSGETIRTNKNMMQFPQRKDYPPDDWFSVTTLSFNADTDYLPYMELSYLKATKEWVVAQYRPLVERVDPTNRSRLGVIALATQAEVNKNHEDTPSDELAVTPRTLANKTATETRRGIARLATTAEVNQNTTATFLDDVIVTPKKLNERTATEDRRGILEIATQAETNAGTDDNTAITPKKLDARRASETLAGIGKLVTTGDTTAEGALRGDAGTNVYNFNNGVDLITPKSLNEKTATEKSKGLVVLATENEVVTGAAAGSASMPIVVTPEMLHRKTSTEARIGLIEIATQTETNAGTDDLRAVTPKKLNDRKATETLDGIIALATTAEVAAGTVTNKAVVPVKLKEFFDVTSHVAVATVDGLTQSGTIWTTVNLGIAAATETQRGTLRVATQAETNAGTLDTVIITAKKLQAKKATDTAEGIIRCATNSEAAAGTSTTLAITPATMQYLNGNDPAWGATTVRRGAVFITTKSNTFIGDNLVGSTQPVDNYLEDFYAVSPRGLNYALQNFLPLNATAQNSLKLGGVVAASWMRRDADQTVTGNNTFNGTSNFVGNVTTNGTLTANAAVTVNNTVTTNNNINQSAKANTVYANTVLSSAAAGTKNLLRTFRGGTTDTTWHETVQASAYRLATGTTDTVDVLTVGDTTNGVLAYYGNTLRLNSKALANINANGDVAIASDASPSIQLRTAATNGWNGVVISNDNGTTTATVINTRNFTQHLDSTYVNVTGDTMTGTLSVNVSGTGGRFTSVSGTAHIQAGDFAGATQKMRLTGINDQVLTEFNINITDYNKAMINGNLIYHAGRKPTPAEIGAVAVAGSTVDTLVVRDYIKIGNVKIYANPVTKTCEFEWEE
Physico‐chemical
properties
protein length:1219 AA
molecular weight: 131147,90100 Da
isoelectric point:5,77737
aromaticity:0,06891
hydropathy:-0,27317

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_008060782.1
1 1219
Domain Start End Length (AA) Confidence
N-terminal 1 291 291 0,7672
Central domain 292 708 418 0,1075
C-terminal 709 1219 510 0,5866
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-291
Central
292-708
C-terminal
709-1219

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage Lw1
[NCBI] 		1307804 Uroviricota > Caudoviricetes > Pantevenvirales > Pseudotevenvirus > Pseudotevenvirus lw1
Host Escherichia coli BL21(DE3)
[NCBI] 		469008 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Escherichia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_008060782.1 [NCBI]
Genbank nucleotide accession
NC_021344 [NCBI]
CDS location
range 161597 -> 165256
strand +
CDS
ATGGTAGCTAAATCATTCCGCGCCACAAGTGGCCTTGATGCTGCTGGCGAAAAGGTTATCAACGTTGGTAAAGCATCCCGCTCTGTGTTGAGCGACGGCGTGAACGTTGACTTTTTTAACGAATTTAACACCGTGCAACAGTATGATCCCGATCGCGGATATTCTGCATACATGGCGATCATCTATGCGCGTCGTATTTGGTATGCTCGTGCTGATATTGCATCACCTGCTGGGGCATTCGATGAAACAAAATGGATCTCAACTCGTAACGATCCAAAATGGGTTTATAATAACGTAACCAGTGTTGACGGTCTTCCCGTTGAATCTGGCACATACTTAATGGCTGATGGACGTTTTTCTGAACTGACCTATGTTCTGCCTGATTCCCCTGTAGAGGGTGATATTGTCACGATTAAAGATGGTGGCGGTATGGTTGGTGTCAACAGTATGTTGGTACGTTCCAACACTCGTCAGATCCGTCTTCGTGATGCTCAGTCAAGTTCTTATCGACTGACTCACCCATATATGACCGTTGCGTTTATTTTTAACGGTAACTTATGGCGCGTTTCTGAAATGCGTGATAACAGGGATTCCCAGTTTGTTAACGCAACTGGTGCGGGTTCTTTCCAGATGCAGTCCGGTATGGTTACGTTCCGTAATAGCGGTACTGGTAAAATCACTCTGCAATTGCCGAAATATGCAAACGATGGTGACTCAATCACAACCTATGACCTGGATAAACTCAGTTCTGTAAACGTTGCGACTTTGCAGGTTTACCCGAACAGCGGACATACTATTACGTATGATAGCATTAACGGCGTAACCTCTGTTGCTTCACAGCGTTCCGGTTATGGTATATTCATCTTTGACCAGACTAACAACCGCTGGGTTGTCTATGATGGTGATAACCGCGTTCGTCTGCGTCGTATCAGTGACGACCTGAACATGCTCCCGAATGATTATGTTTTCGTTACTCCTATTGCTGGGAACCCCCCTACAGTACGTAACGTAACATTAACCCTCCCGCAAGATGTTGCAGAAGGGGATCGCGTGTACATCAGTATGTACATGATGGGTAAAACGCAGAACTGTACGATCAAAGTTAAAGATGGTTCTGGTGAAACGATCCGTACCAACAAAAACATGATGCAGTTCCCACAGCGTAAAGATTATCCACCTGATGACTGGTTCAGTGTAACTACGCTTTCGTTTAACGCTGATACTGACTATCTTCCGTATATGGAATTGTCTTATCTGAAAGCAACGAAAGAATGGGTTGTTGCACAATATCGACCACTGGTTGAACGTGTCGATCCGACTAACCGTTCTCGTCTGGGTGTTATCGCTCTGGCTACTCAAGCAGAAGTGAACAAGAACCATGAAGATACACCGTCCGATGAACTGGCAGTAACCCCGCGCACACTGGCGAATAAAACTGCTACTGAAACGCGTCGTGGTATTGCTCGCCTGGCGACAACTGCGGAAGTAAACCAGAACACTACGGCTACTTTTTTGGATGACGTAATCGTAACGCCTAAAAAGCTGAACGAACGTACAGCAACAGAAGATCGTCGCGGTATACTGGAAATTGCAACTCAGGCAGAAACAAACGCTGGTACTGATGACAATACCGCAATCACGCCTAAAAAGCTCGATGCGCGTCGTGCGTCCGAAACTTTAGCAGGTATCGGTAAACTCGTCACAACAGGCGATACGACTGCTGAGGGGGCTTTACGTGGGGATGCTGGCACTAACGTCTATAACTTCAATAACGGTGTTGATCTGATCACTCCGAAATCGTTGAACGAAAAGACGGCAACCGAGAAATCAAAAGGTTTGGTTGTTCTCGCGACTGAAAACGAAGTGGTTACGGGTGCTGCTGCGGGATCTGCTTCAATGCCGATCGTAGTTACTCCTGAAATGCTGCATCGTAAAACGTCTACTGAGGCGCGGATCGGTTTGATTGAGATCGCTACCCAAACAGAAACAAACGCGGGTACTGATGATTTACGTGCGGTTACTCCTAAGAAACTGAACGATCGTAAAGCGACGGAAACCCTTGACGGCATTATTGCACTGGCAACCACTGCGGAAGTTGCGGCAGGGACAGTAACCAATAAGGCAGTTGTTCCGGTTAAACTGAAAGAGTTCTTCGACGTTACGAGTCATGTTGCTGTTGCGACTGTTGACGGCTTGACTCAATCAGGTACTATCTGGACAACGGTTAATCTGGGGATCGCGGCTGCTACTGAAACTCAACGTGGTACTTTACGCGTTGCAACTCAGGCAGAAACAAACGCGGGTACTCTTGATACTGTTATCATCACTGCGAAGAAACTGCAAGCGAAAAAAGCAACTGACACAGCAGAAGGTATCATTCGTTGTGCAACTAACAGCGAAGCGGCTGCGGGTACTTCAACGACTCTTGCAATCACTCCGGCTACCATGCAATATCTGAATGGTAACGATCCGGCGTGGGGTGCAACCACTGTTCGTCGTGGTGCTGTGTTTATCACGACTAAATCGAATACGTTTATCGGTGATAATCTGGTCGGTTCTACACAGCCAGTGGATAACTATCTGGAAGATTTCTACGCTGTATCGCCTCGCGGTTTGAACTATGCTTTGCAGAACTTCTTACCTTTGAATGCGACAGCACAGAATAGCCTGAAACTGGGTGGCGTTGTTGCTGCAAGCTGGATGCGTCGTGATGCTGATCAAACCGTAACGGGCAACAACACGTTCAACGGTACGAGTAACTTTGTGGGTAACGTAACCACTAACGGAACTCTGACGGCTAACGCGGCGGTGACTGTAAACAATACCGTAACGACGAACAACAACATTAACCAGTCTGCGAAAGCAAACACTGTTTATGCAAATACGGTTCTGAGTTCTGCGGCTGCTGGTACTAAAAACCTGCTTCGTACTTTCCGTGGTGGTACAACGGATACAACGTGGCATGAAACGGTACAAGCAAGTGCATATCGCCTGGCGACTGGTACAACGGATACTGTTGATGTTCTGACGGTTGGTGATACCACAAACGGTGTTCTGGCTTACTACGGTAACACGTTGCGCCTGAACAGCAAAGCACTGGCGAATATTAACGCAAACGGTGATGTTGCTATTGCAAGTGACGCAAGTCCTTCGATACAATTACGAACCGCTGCAACAAACGGCTGGAACGGGGTTGTTATCAGTAACGACAACGGAACTACCACAGCGACGGTGATCAACACTCGCAACTTTACCCAACACCTTGACAGTACCTATGTCAACGTAACGGGTGACACGATGACTGGCACACTGTCAGTTAACGTTAGCGGTACGGGTGGACGCTTTACCAGTGTAAGCGGTACAGCACATATTCAGGCAGGTGATTTCGCTGGGGCAACTCAGAAAATGCGTCTGACTGGTATCAATGACCAGGTATTGACTGAATTTAACATCAATATCACCGATTACAATAAAGCGATGATCAACGGCAACCTGATCTATCATGCAGGTCGTAAGCCTACTCCGGCAGAAATCGGGGCGGTTGCGGTTGCAGGTTCGACGGTTGATACGCTGGTTGTTCGTGACTACATCAAGATCGGAAACGTGAAAATCTACGCAAATCCAGTCACTAAGACTTGTGAATTTGAGTGGGAGGAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
76b662dc203e98f290979842a7ca485cec029781e8c77595ab5ac91caa4fdd0a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5489
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50