Protein

View in Explore
Genbank accession
YP_008060509.1 [GenBank]
Protein name
tail collar fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,59
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MNMAGNFIRVTDAGRAALVAQGNTGTNEHRVTEIGLCTGAFVFDPAMTVMPNERKRVNTFGGKNVAKDTIHVTIQDTTNDQYSLYGYGIYLENGVLAAVYVQSTPIMEKSPAAYLMLSSDMQFVSIDATKLVFGDASFLNPPASETVQGVIELATQEEVNDGKDSLRAITPKTAAGWYAPLIRPKFAGPVSVTSAPTDQDAQLAIAASAGALNRDAKLRFHGTFAAGTTDTNARLVATIRSGYDAGTWGREYLDFWINRTPNDASSDANQIRAMRITYGGRVVVGNREDDGKTAFQVGGDGAFTGGISSSGLDAGGANLRLRNGRDVLLRNDGSNFYVLLTNNSDSGASWNGYRPFTINMATGVLSLDDTGAGAYFGGQVNVRGMLNVSNGANEARMLIGPSGGYFFGTGNAAGFYLPSTGAMFAFDFAKKNLTVVGNEVWNAGNLPNPAQTSGITMSGQILAAEGTVTRPGYSFVNDGAPDTGFFHIADGVFAVTNNGRETMRFLAVDGSYQNNRVLIGQPADDGSMLQVAGNATTRGLHRFGEGKTTAWANCGNDWGYFRSNGHVSIGSEGAAGVLQLIAGNAEVARLYPGGRMTLGGLADDGSNRLQVGGNSRTYGTSFSGGAGSVTAWVSADANYGYFRTAGNATVGSENANGYCDLFAGNAARLRVTPSGRVLIGTVSDNGGDLLQVAGTVRGTNGVGALIASNGGGTSQTSIILRREGGAVDQKQWELMHGGDGTFAIRTVNDAYSASQNALWITRGSGSNVGNMVLMPNGGRVLVGGATDDGSILNAEGLVRGRGYAVDGGASWATIYFKNGAKTRFAIGKTDTDDFAMTAWADDGTTQSRVLDIARGTQVVSFAKRPTWAGGAVPYDTGNFDPNSKVNKAGDTMTGDLRVKQPNNTDARGFVAARADGTAQAWIHATMNGNYSAWATMKPDGNWQSNVIVVYNDDNRIHFNSNIHVTALSRFYNRPTLNRDGWQADIGLRNNRPGYDSWTYLRARDGGGMEIINSAYNAVTWSVDDLGNMFIRGAHILGTDGNLNLTWRGRYLSAEIDDIWGNINARASAGARVQWDSGVNNFGTVDRLNGALPAPWVVCGLSGPGNGTANAIVVYGVVLRNQ
Physico‐chemical
properties
protein length:1121 AA
molecular weight: 118292,72260 Da
isoelectric point:6,07765
aromaticity:0,09010
hydropathy:-0,24041

Domains

Domains [InterPro]
DC_1549
ATT
1–292
DC_1549 IPR048390 DC_1142 DC_2017
YP_008060509.1
1 1121
Architecture
ATT
ATT
STR
RBD
ATT 1-292 | ATT 301-358 | STR 806-995 | RBD 1063-1121
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_008060509.1
1 1121
Domain Start End Length (AA) Confidence
N-terminal 1 501 501 0,3554
Central domain 502 703 203 0,4875
C-terminal 704 1121 417 0,8657
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-501
Central
502-703
C-terminal
704-1121

Taxonomy

  Name Taxonomy ID Lineage
Phage Burkholderia phage ST79
[NCBI] 		1282994 Uroviricota > Caudoviricetes > Peduoviridae > Nampongvirus ST79 >
Host Burkholderia pseudomallei
[NCBI] 		28450 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_008060509.1 [NCBI]
Genbank nucleotide accession
NC_021343 [NCBI]
CDS location
range 21262 -> 24627
strand +
CDS
ATGAACATGGCAGGGAATTTCATTCGAGTAACCGATGCCGGGCGCGCTGCGCTGGTGGCGCAAGGCAACACGGGGACGAACGAGCATCGCGTGACCGAAATCGGTCTGTGTACGGGTGCGTTCGTGTTCGACCCGGCTATGACGGTGATGCCGAACGAGCGCAAGCGCGTGAACACGTTCGGCGGGAAGAACGTTGCGAAAGACACGATCCACGTCACGATCCAAGACACGACGAACGATCAATACTCGTTGTACGGGTATGGAATCTATCTGGAAAACGGCGTGCTCGCGGCGGTATACGTGCAGAGCACCCCGATCATGGAGAAGTCACCCGCCGCGTATCTGATGCTGTCGTCCGACATGCAGTTCGTGTCGATCGACGCGACGAAACTCGTTTTCGGCGACGCGTCGTTCTTGAATCCGCCTGCATCGGAAACGGTGCAGGGCGTCATCGAACTGGCGACACAGGAGGAGGTCAACGACGGCAAGGATTCGCTGCGCGCGATCACGCCTAAAACCGCTGCCGGATGGTATGCACCCCTCATTCGCCCGAAGTTCGCCGGGCCGGTGAGCGTTACGTCGGCGCCGACCGATCAGGACGCGCAGCTCGCAATCGCGGCATCGGCCGGGGCGCTGAACCGCGACGCGAAGCTGCGCTTTCACGGCACGTTCGCAGCGGGCACGACGGACACCAATGCTCGGCTCGTCGCGACGATCCGGAGCGGATATGACGCCGGGACGTGGGGCCGGGAATACCTGGACTTCTGGATCAACCGCACGCCGAACGACGCGAGCAGCGACGCGAACCAGATCCGCGCGATGCGAATAACGTACGGCGGCCGGGTCGTCGTGGGCAATCGTGAAGATGACGGAAAGACCGCGTTTCAGGTCGGCGGCGACGGCGCGTTCACTGGCGGCATTTCGTCGTCGGGGCTCGACGCGGGCGGCGCCAATCTCCGACTGCGGAACGGTCGCGATGTGCTGCTGCGCAATGACGGCTCGAATTTCTATGTTTTGCTGACCAACAACAGCGATTCGGGCGCATCGTGGAACGGGTATAGGCCGTTCACCATCAATATGGCTACGGGTGTCTTGTCGCTGGATGACACAGGCGCCGGGGCGTACTTCGGCGGGCAAGTGAACGTCAGGGGCATGCTGAACGTCAGTAATGGCGCAAACGAGGCGCGCATGCTGATCGGCCCGAGCGGCGGCTACTTCTTCGGGACTGGCAACGCTGCCGGGTTCTATCTCCCGTCCACGGGCGCGATGTTCGCATTCGATTTCGCGAAAAAGAATCTGACCGTCGTCGGAAATGAAGTGTGGAACGCGGGCAATCTGCCGAACCCGGCACAAACGAGCGGCATCACCATGTCCGGGCAAATTCTGGCCGCTGAAGGCACGGTGACGCGACCGGGATATTCGTTCGTGAACGACGGCGCGCCGGACACGGGTTTTTTTCATATCGCTGATGGCGTGTTTGCGGTCACGAACAACGGGAGAGAAACCATGCGGTTTCTTGCCGTCGACGGCAGCTATCAAAATAATCGCGTCCTGATCGGCCAGCCAGCCGACGACGGCAGCATGTTGCAGGTAGCGGGCAACGCGACCACTCGCGGTTTGCATCGGTTCGGCGAGGGCAAGACTACTGCGTGGGCCAACTGTGGTAACGATTGGGGCTACTTCCGCTCGAACGGCCACGTCTCGATCGGCAGTGAAGGCGCTGCCGGTGTCCTGCAACTTATCGCGGGCAACGCCGAAGTCGCGCGACTCTATCCGGGCGGTCGGATGACGCTGGGCGGACTCGCAGACGATGGATCGAATCGGCTGCAAGTTGGCGGGAATAGTCGCACCTATGGCACGTCATTTTCTGGTGGCGCAGGCTCGGTTACAGCATGGGTGTCGGCTGACGCGAATTACGGTTACTTCCGCACGGCAGGTAACGCAACCGTCGGCTCGGAGAACGCGAACGGTTATTGCGATCTTTTTGCGGGCAATGCCGCACGCCTTCGCGTGACGCCGTCCGGTCGCGTGCTGATTGGCACCGTCAGCGATAACGGTGGCGACCTCCTGCAAGTCGCGGGCACGGTAAGGGGCACGAACGGCGTCGGGGCGCTGATCGCTTCCAATGGCGGCGGTACGAGTCAGACGTCGATCATTCTGCGGCGCGAAGGTGGCGCAGTCGATCAAAAGCAGTGGGAACTGATGCACGGCGGCGATGGCACGTTCGCCATTCGCACCGTCAACGATGCGTACTCCGCGTCTCAGAACGCACTGTGGATCACGCGCGGCAGCGGTTCAAACGTTGGGAATATGGTGCTGATGCCGAACGGCGGACGCGTGCTGGTCGGTGGCGCGACTGACGACGGCTCAATTCTCAACGCGGAAGGGCTCGTGCGCGGTCGCGGATACGCTGTCGATGGTGGCGCATCGTGGGCGACGATCTATTTCAAGAACGGCGCCAAAACGCGATTCGCGATCGGAAAAACCGACACCGACGATTTCGCAATGACGGCATGGGCCGACGACGGCACCACGCAATCTAGGGTGCTGGACATTGCCCGGGGCACGCAGGTTGTTTCGTTCGCGAAGCGTCCGACATGGGCGGGCGGAGCCGTACCGTATGACACCGGCAATTTCGACCCGAATTCGAAGGTGAACAAGGCCGGTGACACCATGACCGGCGATCTGCGCGTCAAGCAGCCGAATAACACGGACGCGCGAGGCTTTGTCGCTGCGCGCGCCGACGGTACCGCGCAGGCGTGGATTCACGCCACGATGAACGGCAACTATTCGGCATGGGCGACCATGAAACCGGACGGCAACTGGCAGTCGAACGTCATCGTTGTTTACAACGACGACAACCGAATTCATTTCAATTCCAATATCCATGTCACGGCGCTATCGCGCTTCTACAACCGCCCGACGCTGAACCGTGACGGTTGGCAGGCGGATATCGGCCTGCGGAACAATCGGCCGGGCTACGACTCGTGGACGTACCTTCGTGCGCGCGACGGCGGTGGCATGGAAATCATCAACAGCGCGTACAACGCAGTCACGTGGTCTGTTGACGATTTGGGAAACATGTTCATCCGTGGCGCCCATATTCTCGGCACGGACGGGAATCTGAACCTGACGTGGCGGGGCCGATACCTGAGCGCAGAGATTGACGATATCTGGGGGAACATCAACGCGCGAGCGAGCGCGGGCGCGCGCGTGCAGTGGGATTCTGGTGTGAACAACTTCGGCACCGTCGATCGCCTCAATGGCGCACTGCCGGCGCCGTGGGTTGTTTGTGGATTGAGCGGCCCGGGCAACGGGACTGCAAATGCGATTGTGGTCTACGGCGTAGTACTGAGGAACCAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
3e3ff8e753f594a3bae114bb81f15ee21bff4a1ff1c332a2cffef98ef2a93769
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6073
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The complete genome sequence of bacteriophage ST79, a lytic bacteriophage that lysed Burkholderia pseudomallai Yordpratum,U., Stone,J.K., Bollig,M.C., Tangphatsornruang,S., Tattawasart,U., Wongratanacheewin,S., Keim,P., Tuanyok,A. and Sermswan,R.W. 2016-05-27 — GenBank