Protein

View in Explore
Genbank accession
AOT25969.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 0,95
Protein sequence
MPPVTRLGDIALGHSCYPPSPTIEASSNVFANSIAVHRLGDKIQPHACPGTPPHGRNSSSGSASVFTNSKATCGIGDAVNCGGIIAQGSNNVFRG
Physico‐chemical
properties
protein length:95 AA
molecular weight: 9600,63750 Da
isoelectric point:8,49431
aromaticity:0,04211
hydropathy:-0,13789

Domains

Domains [InterPro]
cd14737
STR
2–95
cd14737
G3DSA:2.60.200.60
STR
3–94
G3DSA:2.60.200.60
IPR008727
STR
13–86
IPR008727
AOT25969.1
1 95
Architecture
STR
STR 2-95
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AOT25969.1
1 95
Domain Start End Length (AA) Confidence
N-terminal 1 56 56 0,1610
Central domain 57 84 29 0,0030
C-terminal 85 95 10 0,9888
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-56
Central
57-84
C-terminal
85-95

Taxonomy

  Name Taxonomy ID Lineage
Phage Campylobacter phage vB_CjeM_Los1
[NCBI] 		1904491 Uroviricota > Caudoviricetes > Connertonviridae > Fletchervirus Los1 >
Host Campylobacter jejuni
[NCBI] 		197 cellular organisms > Bacteria > Pseudomonadati > Campylobacterota > Epsilonproteobacteria > Campylobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AOT25969.1 [NCBI]
Genbank nucleotide accession
KX879627 [NCBI]
CDS location
range 111680 -> 111967
strand -
CDS
ATGCCACCAGTAACTAGATTAGGAGATATAGCATTAGGACATAGTTGTTATCCACCTTCTCCTACAATAGAAGCAAGTTCTAATGTTTTTGCAAATTCAATAGCTGTTCATAGATTAGGTGATAAAATACAACCACATGCATGTCCTGGTACACCACCTCATGGCAGAAATAGTTCAAGTGGTAGTGCAAGTGTTTTTACAAATTCAAAAGCTACTTGTGGTATAGGGGATGCTGTTAATTGTGGAGGTATAATCGCTCAGGGGAGTAATAATGTTTTTAGAGGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5a4c6db0c54b7b0c06f32d2d92d70387d18696d3f1a5e61d6fa86935628971fe
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9553
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome analysis of vB_CjeM_Los1, a virulent Campylobacter bacteriophage isolated in the Republic of Ireland Coffey,A., McAuliffe,O. and Bolton,D. 2006-06-30 — GenBank