Protein

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Genbank accession
YP_009003390.1 [GenBank]
Protein name
distal tail protein Dit
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAVFQFNGYDLNDYFKLIKVSHEIGNERDITTDSAPKIGVNVQQVSFGAKKIKLTVSLATRELNDNAFVDPNEPAPIDYNMFHHVREQAARVLHSDKPVELKLPDEPDRYYLAIVTGEASLKGISDWYDQAEIEFLVPDGVAHSTTYRSFETPKIENNKMVFDLVNDGSVNANPIITVKHNSENGYIGLVNSTGVCELGDRLEANTEDYRHSEVLFDYASSNGEHRIPNGLSQGLKNIGISNDVNDTKPNGTLYIDNAWGRPHIALQSGQVASVTFDIPRDSTGEKGALYEYFWWRQIFWLGSASQMGYFKICVTDASGTFLYGVETFKRYNGLGCEYNFLASDGKGGFRIVDRKNFLGTHIEQHNPFNEPRGWSDILRFDDVVQFYWWGSYPRYTIPEIKGKKSDKIHVILGKVGNAPLVTHMYLDDFIYRKDYVFGVRDIPNRYRAGGKVVIDSETDTVIVDNIPKIVDVVQGSDFLTIPPGKSQLEVYCSSWVTNKPSVSVKFEERYL
Physico‐chemical
properties
protein length:511 AA
molecular weight: 57764,08240 Da
isoelectric point:5,39143
aromaticity:0,11937
hydropathy:-0,39687

Domains

Domains [InterPro]
DC_0077
STR
1–511
DC_0077
G3DSA:2.40.30.200
ATT
2–143
G3DSA:2.40.30.200 IPR054738
IPR008841
STR
14–137
IPR008841
IPR006520
Unmapped
83–143
IPR006520
YP_009003390.1
1 511
Architecture
ATT
STR
ATT 1-143 | STR 144-511
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009003390.1
1 511
Domain Start End Length (AA) Confidence
N-terminal 1 207 207 0,9484
Central domain 208 406 200 0,1763
C-terminal 407 511 104 0,5259
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-207
Central
208-406
C-terminal
407-511

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptococcus phage 20617
[NCBI] 		1392231 Uroviricota > Caudoviricetes > Aliceevansviridae > Brussowvirus 20617 >
Host Streptococcus thermophilus DSM 20617
[NCBI] 		1091038 Bacteria > Firmicutes > Bacilli > Lactobacillales > Streptococcaceae > Streptococcus

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009003390.1 [NCBI]
Genbank nucleotide accession
NC_023503 [NCBI]
CDS location
range 32236 -> 33771
strand +
CDS
ATGGCCGTGTTTCAATTTAACGGATATGATTTGAATGATTACTTCAAATTAATCAAAGTGTCGCACGAAATTGGGAATGAACGCGATATCACTACAGACTCAGCCCCTAAAATTGGGGTTAATGTTCAACAAGTTTCGTTTGGTGCTAAAAAAATAAAATTAACTGTCAGCTTAGCGACTAGAGAACTTAACGATAATGCTTTCGTAGACCCAAACGAACCAGCTCCAATTGATTACAACATGTTTCATCACGTAAGGGAACAAGCGGCTAGAGTGCTACACTCTGATAAACCGGTAGAATTGAAATTACCTGATGAGCCAGATAGGTACTATTTAGCGATAGTGACAGGAGAAGCTAGTTTGAAAGGTATCTCTGACTGGTATGACCAGGCTGAAATTGAATTCTTAGTACCTGACGGAGTCGCACATTCGACTACCTATCGCAGTTTTGAAACCCCTAAAATAGAGAACAACAAGATGGTATTTGACCTTGTTAACGATGGATCAGTTAATGCTAACCCAATAATTACAGTGAAGCACAATAGTGAGAATGGCTATATTGGATTAGTTAATAGCACAGGTGTCTGCGAGCTTGGGGACAGGTTAGAAGCAAATACAGAAGATTATAGACATTCAGAGGTACTTTTTGATTACGCTTCGTCAAACGGGGAGCACAGAATCCCTAACGGTTTATCTCAAGGATTGAAAAACATTGGCATCTCAAACGATGTCAACGACACCAAGCCAAACGGAACTCTTTACATCGATAACGCTTGGGGTCGTCCTCACATTGCATTACAGAGTGGTCAAGTAGCATCTGTTACTTTTGACATCCCAAGAGATTCAACTGGTGAAAAAGGCGCTCTGTATGAATATTTTTGGTGGAGACAAATTTTTTGGCTTGGTTCTGCAAGTCAAATGGGTTATTTTAAAATTTGTGTCACAGACGCAAGTGGTACATTTTTGTATGGTGTTGAAACTTTTAAACGTTACAATGGTTTAGGCTGTGAATATAATTTTCTAGCTAGTGACGGTAAGGGAGGTTTCCGTATTGTCGACAGGAAGAATTTTTTAGGAACGCACATCGAGCAGCACAACCCATTTAATGAACCTAGGGGATGGTCAGATATCCTAAGGTTTGATGATGTCGTACAGTTCTACTGGTGGGGTTCTTATCCTAGATATACAATTCCTGAAATTAAGGGGAAAAAATCAGATAAAATTCATGTCATTTTAGGTAAGGTAGGCAACGCACCACTTGTTACACACATGTATTTAGATGATTTTATATACCGAAAAGACTATGTTTTTGGTGTCAGGGATATCCCTAATAGATACCGCGCTGGTGGGAAAGTGGTAATAGATAGTGAAACTGATACCGTCATTGTAGATAATATCCCGAAAATCGTTGATGTTGTGCAAGGCTCTGACTTTCTCACGATTCCACCGGGAAAATCACAATTAGAAGTATACTGTTCAAGTTGGGTTACGAATAAGCCCTCTGTGTCTGTTAAATTTGAAGAAAGGTATTTGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
52f9d3696c48c70ee2980652f9ecc9af722b8e2ca337c4939cb8ec99117e5d6b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8641
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Streptococcus thermophilus prophage 20617 Mora,D. and Arioli,S. 2005-11 — GenBank