Protein

View in Explore
Genbank accession
YP_009837293.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,88
TF
Evidence RBPdetect2
Probability 0,92
Protein sequence
MFGETCSLSATGTPTCGTGGWVGPVPGDPSTSDVYITATPAFGGIDVNITWPQINPQAVAYVSLYRSLLPDPESAAIHDQFTGTFYYDRVDDVTKPTYYYWVRIMSVNGTFSEMIGPAWSQPKPLIDEMIEQLTGKIDLGVLSQSLKLEIDQITMNKLGITQEMLDRAQNDDGLGVRINEVTAHSGETRALLQEEVVARASQGEAFVSTVNTLYSELNGNIAAIQVTTTALTTKVNALAEQITNVETQWGEDLAQVQLTLQTQVDTVNGKVTDIGARFTAQVNVNGLIGGFGVYNDGTTVEAGFDVDRFWIGRTDGDKRKPFIIDEGIVYIDEAAIKNLTFSKLRDETGAFLVQNGKIQAQYLEVDTIEFNNAKSDNYIAGQQGWALNANGTMEFNGNGGADGRVLLNENGFRIYSGNVLVVTLGRLL
Physico‐chemical
properties
protein length:428 AA
molecular weight: 46487,44240 Da
isoelectric point:4,37879
aromaticity:0,08645
hydropathy:-0,14463

Domains

Domains [InterPro]
DC_0416
STR
5–427
DC_0416
IPR015406
RBD
276–400
IPR015406
IPR053171
Unmapped
278–415
IPR053171
YP_009837293.1
1 428
Architecture
STR
STR 5-427 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Littlefix
[NCBI] 		2079289 Uroviricota > Caudoviricetes > Schitoviridae > Littlefixvirus littlefix >
Host Pseudomonas sp.
[NCBI] 		306 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009837293.1 [NCBI]
Genbank nucleotide accession
NC_048697.1 [NCBI]
CDS location
range 69935 -> 71221
strand -
CDS
ATGTTTGGCGAAACTTGCAGCCTGTCTGCTACTGGGACACCGACTTGCGGTACAGGCGGGTGGGTTGGACCAGTTCCTGGAGATCCAAGTACCAGTGATGTTTATATCACTGCTACTCCTGCATTCGGTGGTATTGATGTAAACATCACTTGGCCACAAATTAACCCACAAGCTGTGGCTTATGTGTCCTTGTATCGTAGTCTGTTGCCTGATCCTGAGTCTGCTGCTATCCACGATCAGTTTACTGGCACTTTCTACTATGACCGCGTAGATGACGTAACTAAACCCACGTATTACTACTGGGTTCGGATTATGTCGGTTAACGGCACGTTCAGTGAAATGATTGGACCGGCTTGGTCACAGCCAAAGCCTCTCATTGATGAAATGATTGAGCAACTCACCGGTAAGATTGACTTGGGTGTGTTATCCCAGTCTCTCAAGCTTGAGATTGATCAGATCACCATGAACAAGCTGGGTATTACCCAAGAGATGCTTGATCGTGCACAGAATGACGATGGCTTAGGTGTTCGAATTAACGAGGTCACAGCACACTCTGGTGAGACGCGTGCGCTGCTTCAAGAAGAAGTTGTAGCTCGGGCAAGCCAAGGTGAGGCATTCGTCTCCACAGTCAACACGCTCTACTCAGAGCTGAATGGCAACATTGCTGCCATCCAAGTGACAACCACTGCTCTGACTACCAAGGTCAATGCCTTGGCTGAGCAGATCACCAACGTTGAAACTCAATGGGGCGAAGATCTTGCACAAGTACAGCTCACCTTGCAGACGCAGGTTGATACTGTAAATGGCAAGGTCACTGACATTGGTGCGCGTTTCACTGCACAGGTTAACGTCAATGGATTGATTGGTGGTTTCGGTGTCTATAACGACGGTACCACTGTAGAAGCTGGTTTTGACGTAGACCGATTCTGGATTGGTCGAACTGATGGTGATAAGCGCAAACCATTCATTATTGATGAAGGCATTGTGTATATCGACGAAGCCGCCATTAAGAACCTCACGTTTAGCAAGCTTCGTGATGAAACTGGTGCTTTCCTCGTACAAAATGGGAAAATTCAAGCTCAGTACCTTGAAGTTGACACTATTGAGTTCAACAACGCTAAATCTGACAACTACATTGCAGGTCAGCAAGGTTGGGCACTTAATGCTAACGGTACTATGGAGTTCAACGGCAATGGTGGCGCCGATGGACGTGTACTACTTAATGAGAACGGATTCCGTATCTACTCGGGCAACGTTCTCGTTGTTACTTTAGGACGGTTGCTGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1147147392c069a427ce864c9350e916daa12b9ce8f391bcba02133bd3b3f477
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7298
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Pseudomonas phages infecting Pseudomonas sp. isolated from Prunus avium Colberg,O., Carstens,A.B., Kot,W. and Hansen,L.H. 2013-08 — GenBank