Protein

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Genbank accession
YP_009191475.1 [GenBank]
Protein name
tail spike protein with colonic acid degradation activity
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MTNITPNIVVSQPSQLFTLARSFKANANGKIYIGKIDTDPVNQENQIPVYLEREDGTHVQVAQPIVINSAGYPVYNGQIAKFVTVQGHSMAVYDRCGVQQFYFPNVLKYDPDQFEKRLSGNDGFKFIGRVPDIDTLRTIHGKDGDAVILEAYRVGDGLGESVVYWDATSTKNDNGGTVFAVSGVATGRWIRKYKTLEAKMFGLPKEGDCYDEMAAIEAIMFEEGVDCIFYDGIYAITGSRNMPWRGSDLNNFKSYKGASIRCIGNVVFSTKSPDGADVFQMNCVSDLNIIGFPVLKGTLTRGDSSGTNGVSITNGGKNIFIEVEADSLPFTVTSSGLDGGKAVTIQNGPSAVLPYQNIKINCRRAHNCPYGFEMSIVGDSLINNPNSGIEVDIYAENCYRGVAIGSSENTKEIPTNGLNHGVKVRAILKDCQQDIVVIRDWGLDIEATVIQTKDPFMYNPHDSKREVLESAGSKYSRIKISGIKLAVDSLYTIGGIHYSPSVSGRTGQAEWCVYDLNVTTQVATTTLTVMDSGGVTAKNNTLRSSTLSAVDVIAFISNGNTVTIGVP
Physico‐chemical
properties
protein length:567 AA
molecular weight: 61504,66440 Da
isoelectric point:5,43986
aromaticity:0,08642
hydropathy:-0,16596

Domains

Domains [InterPro]
IPR009093
ATT
1–113
IPR009093 IPR059934 DC_2031
IPR036730
ATT
2–111
IPR036730
IPR036730
ATT
7–109
IPR036730
YP_009191475.1
1 567
Architecture
ATT
RBD
STR
ATT 1-113 | RBD 129-204 | STR 205-567
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009191475.1
1 567
Domain Start End Length (AA) Confidence
N-terminal 1 211 211 0,9949
Central domain 212 500 290 0,9872
C-terminal 501 567 66 0,9306
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-211
Central
212-500
C-terminal
501-567

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SEN22
[NCBI] 		1647458 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica subsp. diarizonae
[NCBI] 		59204 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Salmonella

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009191475.1 [NCBI]
Genbank nucleotide accession
NC_028696.2 [NCBI]
CDS location
range 18550 -> 20253
strand +
CDS
ATGACTAACATCACGCCAAATATTGTTGTATCACAACCAAGCCAGTTATTTACTTTAGCGCGTTCTTTTAAAGCAAATGCTAATGGCAAAATCTATATTGGTAAGATTGACACTGACCCGGTAAACCAAGAAAACCAGATCCCTGTATATCTGGAACGAGAAGATGGTACTCATGTTCAGGTGGCACAGCCAATTGTTATCAATTCTGCAGGCTATCCGGTATACAACGGACAGATTGCAAAGTTCGTGACTGTGCAGGGACACAGCATGGCTGTGTATGATAGGTGTGGGGTGCAACAGTTCTATTTCCCGAATGTACTGAAGTATGATCCAGACCAATTTGAGAAGAGACTGAGCGGGAATGATGGATTTAAATTCATTGGTCGAGTTCCTGATATTGATACTCTGCGTACTATTCATGGTAAAGATGGTGATGCTGTTATTCTGGAAGCGTACCGGGTGGGTGATGGTCTTGGCGAGAGCGTCGTTTATTGGGATGCTACATCAACTAAAAATGACAATGGCGGAACAGTATTTGCGGTATCTGGTGTTGCAACTGGAAGATGGATTCGTAAGTATAAAACTCTAGAAGCAAAAATGTTTGGTCTTCCAAAAGAAGGGGACTGTTACGACGAGATGGCGGCTATCGAGGCCATTATGTTTGAGGAAGGCGTGGATTGTATTTTCTATGACGGAATCTATGCGATTACTGGATCCAGAAATATGCCGTGGCGCGGTAGCGACCTGAATAATTTCAAATCGTACAAGGGGGCCAGCATTCGCTGCATTGGTAATGTAGTTTTTTCAACAAAATCTCCTGATGGTGCTGATGTATTCCAGATGAACTGTGTTTCCGATTTAAATATTATCGGATTCCCAGTTCTTAAGGGTACGCTCACTAGAGGTGATTCCTCCGGAACAAATGGCGTATCAATAACCAACGGAGGGAAAAATATATTCATTGAGGTTGAGGCTGATTCATTACCTTTCACCGTGACAAGTTCAGGACTAGATGGTGGAAAAGCTGTAACTATACAGAACGGGCCTTCAGCGGTACTCCCTTATCAAAATATAAAAATTAATTGTCGGAGAGCGCACAACTGCCCATATGGCTTTGAGATGTCGATAGTAGGAGATTCACTGATAAATAATCCAAATTCTGGCATAGAGGTAGATATTTATGCTGAGAACTGTTACAGAGGCGTTGCAATCGGCTCTAGCGAGAACACCAAAGAGATACCGACAAATGGATTAAACCATGGTGTAAAAGTTAGAGCTATTCTTAAAGATTGTCAGCAGGATATCGTTGTTATAAGGGATTGGGGTTTAGACATTGAGGCGACGGTAATCCAGACTAAAGACCCTTTTATGTACAATCCACATGACTCAAAAAGGGAAGTTTTGGAGTCTGCTGGCTCTAAGTACTCACGCATAAAAATATCCGGAATAAAATTGGCTGTCGATTCACTGTATACAATAGGGGGGATTCATTATAGCCCATCCGTCAGTGGGAGAACCGGTCAAGCCGAGTGGTGCGTATATGACCTTAATGTTACGACGCAAGTCGCTACAACAACACTTACTGTCATGGATTCAGGTGGTGTTACCGCAAAAAATAACACGCTCAGGTCATCTACACTATCAGCAGTAGATGTGATTGCATTCATATCCAATGGTAATACCGTAACTATAGGCGTTCCGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
69e61c8e1eb5d6ad72081b09ba4f9891aad5b19b975d0c7680cc95dde7f63d19
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8349
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phages of Salmonella enterica subsp. salamae and subsp. diarizonae: novel phages with a mosaic genome structure and activity against pathogenic S. enterica subsp. enterica isolates Pastekova,L., Bosak,J., Dedicova,D., Benada,O., Smarda,J. and Smajs,D. — — GenBank