Protein

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Genbank accession
QDH50634.1 [GenBank]
Protein name
tail fiber-like protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,66
Protein sequence
MSFHINSDKEKIRGVNPKLIGDNEATIRIGTGTDEREVFRAQLDPNSNLPRIGINRTGQRVNNINVTAGGSGYTLAPVVTISAPGGGGTQALASAFIFNGSVTSIAVNEPGSGYTVPPTVTITGGNGAGAQAEAVLDTIDFELDINGAIRTSTSIISDTARVLNLDIENFVTPDLGLRGPNLKTYMNGTGTIWSSNVILQKDDYRYFGANVYQALNSGQTGNIGPVHTDGTALNGEVVFKHIGFRVTDPNAKGFLTTGESGQFPRSITPLLGDRSDKIATTEYVLNLATNDVGGRIYVSSQIGSDLNDGRSAVNPVRTIKKAAQLAWATPGVKETLVVSGGDYVEDNPISLPPDCSVVGDNLRLVIIRPGNPNKHIFKFGDKNYVTGVTYRDQVDSNGDSVATWDFAMVFDDKQRIQVDYDANGDFGVNFPIGHQIFGPNRFRVAFQNNTGLSNFVTGVEVVGVNTGARADVLDVIFNTTTGASAYISGTIDVEISSGSFVEGEQYTYITSASTGSAISLTISQTAGTNALRFTDDPTSTIPVGSYVYLDDTTDANFTAGYYQVGSIDDANAPTYWDVQFVPILNAPSWDTSASASITINDATPVINTIDTTSLRSIRAEGEVVSVDKDIVSTLPITRLDFSLQGDPSIATEGFQFEQFGNAEDLGGVVFYTNDLVGRTNTHEFKEGQEILIEGLPTANPDLSALNGKQRIYKVLEDADGRARRFVIPKKFPALANSDFDPGEFATVKSYTTSVTLSLLNSPNKFQISTPVERNSIRLTPLFVPARPPLCVLLKAPAVLAKSASTGLIASVPGIGGMTPRPVPYPDSSDASMWISMTS
Physico‐chemical
properties
protein length:838 AA
molecular weight: 89319,44230 Da
isoelectric point:4,70476
aromaticity:0,08115
hydropathy:-0,14177

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QDH50634.1
1 838
Domain Start End Length (AA) Confidence
N-terminal 1 374 374 0,9808
Central domain 375 707 334 0,4398
C-terminal 708 838 130 0,0999
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-374
Central
375-707
C-terminal
708-838

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-B43
[NCBI] 		2484638 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Synechococcus sp. MW02
[NCBI] 		1620844 Cyanobacteriota > Cyanophyceae > Synechococcales > Synechococcaceae > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDH50634.1 [NCBI]
Genbank nucleotide accession
MN018232.1 [NCBI]
CDS location
range 162818 -> 165334
strand +
CDS
ATGAGTTTTCATATTAATTCCGACAAAGAGAAAATTAGAGGCGTAAACCCTAAACTCATCGGTGATAATGAAGCTACAATCAGAATCGGTACTGGAACTGACGAGCGAGAAGTATTCAGAGCTCAGTTAGATCCAAATAGTAATCTACCAAGAATCGGTATTAACAGAACTGGTCAAAGGGTTAACAATATTAATGTTACCGCTGGTGGTTCTGGATATACTTTAGCGCCAGTTGTTACTATTTCTGCTCCTGGTGGCGGTGGAACTCAAGCTCTTGCTTCTGCTTTTATCTTCAACGGATCTGTAACTTCAATTGCTGTTAATGAACCTGGAAGTGGTTATACAGTTCCTCCCACAGTAACAATTACTGGCGGTAACGGTGCAGGTGCTCAAGCAGAAGCAGTTCTGGATACTATCGATTTTGAACTTGATATCAATGGTGCTATCAGAACATCAACATCTATCATTTCTGATACTGCAAGAGTATTAAACCTAGATATTGAAAACTTTGTTACTCCAGATTTAGGACTTAGGGGTCCAAATCTTAAGACCTACATGAATGGTACTGGAACCATTTGGTCTTCCAATGTCATCCTTCAAAAAGATGATTACAGATACTTTGGTGCCAATGTATATCAAGCACTAAACTCTGGACAAACTGGAAATATCGGTCCTGTTCATACTGATGGCACTGCGCTGAATGGCGAGGTTGTATTCAAGCACATTGGATTTAGAGTAACTGATCCAAATGCAAAAGGATTTTTAACAACTGGAGAATCAGGACAATTTCCAAGATCTATTACACCATTGCTTGGTGATAGATCCGATAAAATTGCTACTACAGAATACGTCCTCAATCTAGCAACAAATGATGTTGGTGGTCGTATTTACGTTTCATCTCAAATTGGTTCTGATTTGAACGATGGTCGTTCTGCGGTAAACCCAGTTAGAACAATCAAGAAGGCAGCACAACTCGCTTGGGCTACTCCTGGGGTAAAAGAGACTCTGGTTGTTTCTGGTGGTGACTATGTAGAAGATAACCCAATTTCTCTACCTCCAGATTGTTCAGTTGTTGGTGATAACCTCCGTCTAGTAATTATCAGACCAGGAAATCCAAACAAACATATTTTCAAGTTTGGTGATAAGAACTACGTTACTGGAGTTACATATAGAGACCAAGTTGATTCAAACGGCGACTCTGTTGCAACTTGGGACTTTGCAATGGTCTTTGACGACAAGCAAAGAATTCAGGTAGATTATGATGCCAATGGAGATTTTGGTGTTAATTTCCCAATCGGTCATCAAATTTTTGGACCAAATAGATTTAGAGTTGCATTCCAAAATAACACTGGTTTATCTAACTTTGTTACTGGTGTAGAGGTAGTTGGTGTTAACACTGGTGCTAGAGCAGACGTTTTAGACGTAATATTCAACACCACTACAGGAGCTAGCGCGTACATCTCAGGTACTATTGATGTAGAAATTTCATCTGGTTCTTTTGTTGAAGGTGAACAATATACGTATATTACTTCAGCATCAACAGGATCTGCAATTAGTTTAACTATTAGTCAAACTGCAGGAACAAATGCTTTAAGATTTACTGATGATCCAACATCTACTATTCCCGTTGGATCATATGTGTATCTAGATGACACAACAGATGCTAACTTCACTGCAGGTTATTATCAAGTAGGTTCTATTGATGATGCAAATGCTCCTACCTATTGGGATGTTCAATTTGTTCCTATTCTTAACGCACCCTCTTGGGATACCTCTGCAAGTGCATCAATCACTATCAATGATGCAACCCCAGTTATTAATACTATTGATACAACTTCACTGAGATCAATTAGAGCTGAAGGTGAGGTTGTATCGGTTGACAAAGATATTGTTTCTACTCTCCCAATTACAAGATTAGATTTCTCACTGCAAGGAGATCCAAGCATTGCTACCGAAGGTTTCCAATTTGAGCAGTTTGGAAATGCTGAAGATCTTGGTGGTGTTGTATTCTATACAAATGATCTTGTTGGAAGAACAAATACTCACGAATTTAAAGAAGGTCAAGAGATTTTAATTGAAGGATTACCAACAGCAAATCCAGACCTATCAGCACTAAATGGAAAACAGAGAATTTACAAAGTTTTAGAAGATGCAGATGGTCGTGCAAGAAGATTTGTAATTCCTAAAAAATTCCCAGCACTCGCAAATTCAGATTTTGATCCTGGTGAATTTGCTACAGTAAAATCATATACAACTTCTGTAACTCTTTCTCTACTAAACTCACCAAATAAATTTCAGATTTCAACACCAGTTGAAAGAAATTCAATTAGACTGACACCTCTATTTGTTCCTGCAAGACCACCTCTATGTGTCTTGCTAAAGGCACCAGCAGTTCTTGCAAAATCAGCTTCTACTGGGTTGATCGCATCAGTCCCTGGCATAGGTGGAATGACACCACGTCCAGTTCCATATCCAGACTCCAGTGACGCATCCATGTGGATTTCAATGACTTCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d456598bc74c00e1a5161797ea7a7b0d1bbb931695b9868f33360bb8b9d2e69a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5349
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, characterization and genome sequencing of the novel cyanophage S-B43 from the Bohai Sea, China Wang,M. 2020-10 — GenBank