Protein

View in Explore
Genbank accession
ATN93582.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,52
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MGAVAKKACREAPRKRRAVTGGKGGQAKQKQPSIASNSVPSISTARIVYLWSWGPIVGPVDGLRSVKLNGTAIQSADGTINYPSAKWQFRNGDLNQGRLEGIQESSNEIDVKKELVFGTPWLHTITNSMIDAVRIRLSWPTLRSQDAAGNIKGVHIDYAVEISTDNGPYVEVLVSAVDRKNITEYERAHRLELPTGNRWTIRVRRLTPNANSDLVVDQMIVKAIVEVVDSDQEYPLTAVSCLEYDAQTFGGDIAKIAVLMRGRIIRVPSNYDATTRTYTTSGTGTSNGIWDGTFKEAYTNNPAWIFYDLVLHPYYGLGDRIDATMVDRWSLYRIAQYCDQMVPDGKGGMEPRFTCNLYFQKQTEAYAVLQDLASIFHGLAYWDGSQIVVNADMPGDPVYTYNQTQILNNGAIKYEGTRARDRHTLYMVSWDNPDQGFETDKEPVFDDEAMVELGGIVRDTTIDAIGCTSLGQAQRAGQWAALTEKLQTQGGVFRVGLDGDIPKPGQVIAVADPMLVGRNNGGRIAAAAGRVVTLDRDTAVPVGARLMVNLPSGKSEGRVVKSVAGRDVTVMADFSEQPQAECGWILDYEDLKLMQFYVRNVTRPEWHQFQFEVIQHDPSKFETIDNGAVVDPRPITGIPVGSQDAPARVMLSQHVVIEQGIAVTVMSIAWDAAPNAVAYDVEWKWGSREWITVPRTAEQMVDVRGIYSGQYMARVRAVSALNVSSIPTTSALTNLEGKVGLPPAVAFLRTTSELFGISIKWGFPPGAEDTQRTELWYGPANDLSVATKLADLAYPQSDYRMQSLLAGATLFFWARLVDRTGNVGPFYPVGKGVIGQASSNAAPVLELIKGQVGRTELGQDIIGEIDKIPGLQDQITALGGLKGYNKDVTYLKGQMVVVGGRIYQAAQAVPTNKPPPNATYWLDVGQSVETANGLALQVSTNTTDITKLGGVVTASASSLQALQASFRDDNGEGDQIDALQGYNATASFLEEVKTRASQNEAMVQRQTELTASVGDVAGTVTDLESVVATDREATAQAIRQIGVKTDDNSADIQTVSRAQADTDGKLSTMWSVKMQLNQNGQYVYAGVGLGIENVDGQLQSQFLVSADRFALVNTIEGGAVSIPFAVQGGQVFINSAFIQDGTITNAKIGNYIASNNYVAGVSGWKLFFDGTFEINSSFGGQARQVINSAGGKVFDENGIKRYQWGDLSA
Physico‐chemical
properties
protein length:1209 AA
molecular weight: 131331,20410 Da
isoelectric point:5,13082
aromaticity:0,08271
hydropathy:-0,21505

Domains

Domains [InterPro]
DC_0014
STR
3–1209
DC_0014
IPR053171
Unmapped
14–960
IPR053171 IPR015406
IPR055385
ATT
106–229
IPR055385 IPR032876 IPR036116
ATN93582.1
1 1209
Architecture
STR
ATT
STR
ATT
STR
STR 3-105 | ATT 106-229 | STR 230-360 | ATT 361-526 | STR 527-1209
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ATN93582.1
1 1209
Domain Start End Length (AA) Confidence
N-terminal 1 345 345 0,9039
Central domain 346 1151 807 0,0311
C-terminal 1152 1209 57 0,7670
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-345
Central
346-1151
C-terminal
1152-1209

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage VW-6S
[NCBI] 		2041487 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa HIM-6
[NCBI] 		29322 Bacillota > Clostridia > Eubacteriales > Eubacteriaceae > Eubacterium >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ATN93582.1 [NCBI]
Genbank nucleotide accession
MF975720.1 [NCBI]
CDS location
range 17939 -> 21568
strand -
CDS
ATGGGCGCAGTGGCAAAGAAGGCGTGCCGAGAAGCACCTCGCAAGCGCCGCGCCGTAACTGGCGGCAAGGGTGGCCAGGCGAAGCAGAAGCAGCCCAGCATCGCGTCGAACAGCGTCCCGTCCATATCGACCGCGCGCATCGTGTACCTTTGGAGCTGGGGACCCATTGTTGGCCCGGTTGACGGCTTACGCTCGGTGAAGCTGAACGGCACCGCAATACAATCCGCGGACGGCACGATCAACTATCCCAGCGCCAAGTGGCAGTTCCGCAATGGCGACCTGAACCAGGGGCGCCTGGAAGGCATTCAGGAATCGAGCAACGAGATCGACGTCAAGAAAGAGTTGGTCTTTGGCACGCCGTGGCTTCACACCATCACCAACTCAATGATCGACGCGGTGCGCATCCGACTGAGCTGGCCAACACTTCGCAGTCAGGATGCCGCCGGCAACATCAAAGGCGTGCATATCGATTACGCCGTGGAAATATCCACCGACAACGGCCCCTACGTTGAAGTGCTGGTATCGGCCGTAGATCGCAAGAACATCACGGAGTACGAGCGAGCGCACCGCCTGGAGTTGCCCACCGGAAACCGCTGGACTATTCGCGTCCGCCGCCTGACTCCAAATGCAAACTCCGACCTTGTCGTCGATCAGATGATCGTCAAGGCAATTGTCGAGGTGGTCGACAGCGATCAGGAATACCCGCTCACCGCCGTCAGCTGTCTCGAGTACGACGCCCAGACTTTCGGCGGAGATATCGCCAAGATCGCCGTCCTCATGCGTGGCCGCATTATTCGTGTGCCGAGCAACTACGACGCGACAACCCGCACCTACACAACGTCGGGCACCGGCACAAGCAACGGCATTTGGGACGGCACCTTCAAGGAGGCCTACACCAACAACCCGGCGTGGATCTTCTACGACCTGGTGCTGCACCCGTACTACGGGCTCGGCGACCGGATCGACGCGACAATGGTTGATCGCTGGTCGCTCTATCGCATCGCGCAGTACTGCGACCAGATGGTGCCGGATGGGAAGGGGGGCATGGAGCCGCGTTTCACCTGCAACCTCTATTTCCAGAAGCAGACCGAAGCCTACGCCGTGCTTCAGGACCTGGCGTCAATATTCCATGGCCTGGCCTACTGGGACGGCAGCCAGATCGTGGTTAATGCCGATATGCCCGGCGACCCGGTGTACACGTACAACCAGACTCAGATCCTGAACAATGGCGCTATCAAGTACGAAGGCACCCGCGCGCGCGATCGGCACACGCTCTACATGGTGTCCTGGGACAATCCGGACCAGGGTTTTGAAACCGACAAGGAGCCGGTGTTTGATGATGAGGCCATGGTCGAGCTTGGCGGAATCGTGCGCGACACCACCATCGACGCCATCGGCTGCACATCCCTGGGTCAGGCGCAGCGCGCCGGGCAGTGGGCGGCGCTGACCGAAAAGCTGCAGACCCAGGGCGGTGTGTTTCGGGTCGGGCTCGACGGTGATATTCCAAAGCCCGGCCAGGTGATCGCCGTGGCTGACCCGATGCTGGTTGGCCGGAACAACGGCGGCCGGATAGCCGCGGCCGCTGGACGGGTGGTTACGCTCGATCGCGATACTGCGGTGCCGGTCGGCGCGCGCCTGATGGTCAACCTGCCCAGCGGCAAGTCCGAAGGGCGGGTGGTGAAGTCGGTTGCTGGGCGCGACGTCACCGTGATGGCCGATTTCAGCGAGCAGCCCCAGGCCGAGTGTGGCTGGATATTGGACTACGAAGACCTGAAGCTGATGCAGTTCTACGTCCGCAACGTCACGCGGCCGGAGTGGCACCAGTTCCAGTTTGAAGTTATTCAGCACGACCCGAGTAAGTTTGAAACAATCGACAACGGAGCCGTGGTAGACCCTCGGCCAATCACCGGAATTCCCGTGGGCAGTCAGGACGCTCCGGCCCGGGTGATGCTCAGCCAGCACGTTGTCATCGAGCAGGGGATTGCGGTCACCGTCATGTCCATCGCGTGGGACGCGGCACCAAATGCCGTGGCTTATGACGTTGAATGGAAGTGGGGCTCGCGGGAATGGATCACTGTGCCGCGCACTGCTGAGCAGATGGTTGACGTTCGCGGCATCTATTCGGGCCAGTACATGGCCAGGGTGCGCGCCGTGAGCGCGCTCAACGTTTCGTCCATCCCGACGACATCGGCGCTGACCAACTTGGAGGGCAAGGTCGGCCTGCCACCGGCGGTTGCGTTCCTGCGCACCACCAGCGAACTGTTCGGCATCAGCATCAAGTGGGGCTTCCCACCAGGCGCAGAGGACACCCAGCGCACCGAGCTCTGGTATGGCCCGGCCAATGACTTGTCGGTGGCCACCAAGCTTGCCGACCTGGCGTATCCGCAGTCCGATTACCGCATGCAGTCACTGTTGGCTGGCGCAACCCTGTTCTTCTGGGCGCGCCTGGTGGACCGCACCGGCAACGTGGGGCCGTTCTACCCGGTTGGCAAAGGTGTGATTGGGCAAGCCAGCTCGAATGCGGCTCCGGTGCTGGAGTTGATCAAGGGCCAGGTCGGCCGCACGGAGCTTGGCCAAGACATCATTGGCGAGATCGACAAGATCCCTGGCCTGCAAGATCAGATCACCGCTTTGGGAGGGCTGAAGGGGTACAACAAGGACGTCACCTACCTCAAAGGCCAGATGGTGGTGGTAGGGGGGCGGATCTACCAAGCCGCTCAGGCTGTGCCGACCAACAAGCCGCCACCGAATGCCACTTACTGGCTGGATGTTGGCCAGTCGGTAGAGACGGCGAACGGTCTGGCACTGCAGGTCTCCACGAACACCACCGATATCACCAAGCTCGGCGGCGTCGTGACGGCTTCAGCGTCGAGCCTTCAGGCGTTGCAGGCGTCTTTCCGGGACGATAACGGGGAGGGCGACCAGATCGACGCGCTCCAGGGCTACAACGCTACGGCCAGCTTCCTGGAGGAGGTTAAGACTCGCGCCTCGCAGAACGAAGCCATGGTGCAGCGTCAGACCGAACTCACCGCGTCGGTGGGCGACGTCGCTGGTACCGTGACCGACCTGGAAAGCGTCGTGGCCACGGATCGCGAGGCCACGGCCCAGGCTATCCGGCAGATCGGCGTGAAGACCGATGACAACTCCGCGGACATCCAGACAGTAAGCCGGGCCCAGGCCGACACCGACGGCAAACTATCCACCATGTGGTCGGTGAAGATGCAGCTCAACCAAAATGGGCAGTACGTTTATGCGGGAGTCGGACTTGGCATCGAGAACGTAGATGGTCAGTTGCAAAGCCAGTTCCTGGTGAGTGCTGACCGGTTCGCTTTGGTCAACACAATTGAGGGCGGCGCTGTAAGCATCCCGTTCGCAGTGCAGGGCGGGCAGGTTTTCATAAACTCGGCGTTCATCCAAGACGGCACGATCACCAACGCCAAAATCGGCAACTACATTGCGTCCAACAACTATGTTGCGGGTGTTTCTGGCTGGAAGCTGTTCTTCGACGGGACCTTTGAAATCAACAGCTCTTTCGGTGGCCAAGCTCGGCAAGTAATCAATAGCGCGGGCGGTAAGGTCTTCGACGAGAACGGTATCAAACGCTACCAGTGGGGAGATCTTTCCGCATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
51c09957cafb78c2d4547deabb605400dc13d2c048d989b0201e495fb72456b3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7574
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of the cold-active bacteriophageVW-6S and VW-6B from Pseudomonas fluorescens Ji,X., Li,J., Wei,Y., Zhang,Q. and Lin,L. 2020-05 — GenBank