Protein

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Genbank accession
AGN12307.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MATPFRIKRSAVPGKGPSVSDLQLGELALNTYDAELYTLRSRPGIGTEVVKIGGAAIENVLYVNKDGDDGNSGSTPADAKATLKAAVGIASEGTAIKVAAGTYIENNPIKVPKQVSIVGDSLREVTVSPQNADEDMFHVSPGDMISEITFSGTVDKGVAVIAFDPDKIQYVNQSPYIRFCTNRVANSIGLKVDGNKAVGPFKSMVTDSYTQYNVSGIGVSVSNEGYAQIVSLFTMNLDEAVSCHSGGQCDVTNSNSSFGNYGLVADGVGALQYTGTIASEAKENTDKFEVNLSTSSVNISNFVYDNVSGLATVTTSSAHGFNVGMGVTIEGVQLTCPYGTKTYPHQAPYVFTVDTVPNTTSFTTNIGISTLAHSYFGGGTAKINLIRPFDGKAVYFENEYNTIGKIKLTNPGSGYNTAPTVTIGDPSTSSTFGVTATALATIIGSKVDEIQILSNGRGYTSLPSVTISAPDVGINTATATVELLPTYYTVKESTPISAGICTITINETLPYSVGVGTTVPFFRQSRILASSHSFQYIGSGVDPINSLPSRGGVTIQENEVDNRNGGLVVYTSTDQGGNFRIGDGVQIDQISGTITGTSYSKSLFANVTPLILALGGE
Physico‐chemical
properties
protein length:617 AA
molecular weight: 64561,26420 Da
isoelectric point:4,89716
aromaticity:0,07780
hydropathy:-0,03647

Domains

Domains [InterPro]
DC_0763
STR
16–616
DC_0763
IPR012334
STR
53–473
IPR012334
IPR011050
STR
54–339
IPR011050
AGN12307.1
1 617
Architecture
STR
STR 16-616 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGN12307.1
1 617
Domain Start End Length (AA) Confidence
N-terminal 1 112 112 0,8930
Central domain 113 363 252 0,9602
C-terminal 364 617 253 0,1082
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-112
Central
113-363
C-terminal
364-617

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage P-SSM5
[NCBI] 		536454 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGN12307.1 [NCBI]
Genbank nucleotide accession
HQ632825.1 [NCBI]
CDS location
range 122648 -> 124501
strand -
CDS
ATGGCGACTCCGTTTAGAATTAAACGATCTGCCGTTCCTGGGAAAGGACCGTCAGTATCTGACCTACAATTAGGTGAATTAGCTCTTAATACTTATGATGCTGAACTGTATACACTACGTTCACGTCCTGGTATTGGCACGGAAGTTGTAAAAATCGGTGGTGCTGCAATAGAGAATGTTTTATATGTCAACAAAGACGGAGACGACGGAAATTCAGGATCAACCCCTGCCGACGCAAAAGCAACCCTCAAAGCAGCAGTTGGAATCGCATCAGAGGGAACTGCGATTAAAGTTGCTGCTGGAACTTATATAGAAAACAATCCTATAAAAGTACCGAAACAAGTTAGTATTGTTGGAGACAGTTTGAGAGAAGTAACTGTATCTCCTCAGAATGCTGATGAGGATATGTTCCACGTATCTCCTGGAGATATGATAAGTGAAATAACATTTTCGGGGACAGTAGATAAAGGTGTTGCGGTAATAGCATTTGATCCTGATAAAATTCAATATGTTAATCAATCACCTTACATAAGATTTTGTACCAATAGAGTTGCTAATAGTATTGGTTTAAAGGTAGATGGTAATAAAGCAGTAGGACCATTTAAGAGTATGGTTACAGACTCCTACACTCAGTATAATGTGAGTGGTATAGGGGTCTCTGTTAGTAATGAGGGATATGCTCAGATAGTTTCATTATTTACGATGAACCTTGATGAAGCAGTTTCTTGTCATTCTGGTGGGCAATGTGATGTAACAAACTCCAACTCTTCATTTGGTAATTATGGATTAGTTGCTGATGGTGTAGGAGCACTTCAATATACAGGAACCATAGCATCAGAAGCTAAAGAGAATACTGATAAGTTTGAGGTTAATTTAAGTACATCTTCAGTTAATATTTCTAATTTTGTTTATGATAATGTAAGTGGATTGGCAACAGTTACTACTAGTTCTGCTCATGGATTCAATGTTGGAATGGGAGTTACCATTGAAGGTGTTCAATTAACTTGCCCTTATGGAACAAAGACATATCCACATCAAGCTCCATATGTGTTTACAGTTGATACTGTTCCAAACACAACATCCTTTACTACAAATATAGGAATATCAACTCTTGCTCATTCTTATTTTGGTGGTGGTACTGCAAAGATAAATTTGATTAGACCTTTTGATGGTAAGGCTGTTTATTTTGAGAATGAATATAATACTATTGGAAAAATAAAACTTACTAATCCTGGTAGTGGATATAATACTGCACCTACCGTTACTATAGGAGATCCTAGTACTTCAAGTACTTTTGGTGTTACTGCGACAGCATTAGCAACTATAATTGGTAGTAAGGTTGACGAGATTCAAATTCTCTCAAATGGTAGAGGATATACTTCTCTACCATCTGTTACAATTTCTGCTCCTGATGTTGGGATAAATACAGCAACAGCTACCGTAGAATTACTTCCAACTTATTATACTGTTAAAGAATCAACTCCAATTTCTGCTGGAATTTGTACTATTACAATAAACGAAACCCTTCCATATTCTGTTGGTGTTGGAACAACAGTTCCTTTCTTTAGACAAAGTAGAATATTAGCATCCAGTCATTCCTTCCAATATATTGGAAGTGGTGTTGATCCTATTAATTCTCTTCCTTCTCGTGGAGGTGTTACTATACAGGAGAATGAAGTTGATAACCGTAATGGTGGATTAGTTGTATACACTAGTACTGATCAAGGTGGAAACTTTAGAATCGGTGATGGTGTTCAAATAGACCAAATTAGCGGAACTATTACTGGTACTTCTTATTCTAAGAGTTTATTTGCCAATGTTACACCATTAATTCTAGCACTAGGAGGAGAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
60b55bc46b76509fe912192537e953b40193e88e4b41f96a1fa69132b2cd95c8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6646
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Prochlorococcus phage P-SSM5 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank