Protein

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Genbank accession
YP_009821645.1 [GenBank]
Protein name
colanic acid degradation
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MANSYNTYVANGTQTAFLVTFEQRVFTQIQVYVNSELQTGGYTYNSVTKQIVFTYPPTAGAIIRLQRYTDETLLNKFGQDAAFTGQNLDENFEQILFKAEETQEAWQAPLDRALRIPNSEVSISALPTVAFRKNKALGFDDNGQPFMIPLVDIPDSALAIALAMPDGGKWIGTLAGGTFLNRQDTVCLSEFTNNSAYATVSAAVQACFDYAAANNKVVDARGWVGTLNANVTMTNIEVVGGTWKGTSDVFIVNSLFRNFKINNLRLRPYGGDTRIRNGLFDGKPTLSKVASIMLQAIPATGTIEVTDCEFRNGLYGILQQGTGSVMTRGLFRNLSFYDMGGDGIELNVVQNHYDDGCLIENIVLENIDSTGQAPINNSNWGIGIGVAGSSPYGLDTPDSYYAKNITIRNVKARRCRQVVHFEQVRDSLIENIDGDPDQNVSNGSGLTMATVLCYGARRVTINGVRGEPVVTSGTDPHSIRIVMLEWGTNAGVGARGPCQHMTVRNVSSRNGRFYAGVGCQDVGLDNTATFENIDCYNFRLFGVARELNLANITCTVFDCIGDDSAGGTSSNGYLAVGRTTLNMTNVNALSEDLVANQGWSRCAYSYVSSIASNVYARPYPRQGIDGGIGVPVWPSNRVYVMPDATDVNITNWDGTQFPAGREFVEGDLIIRTDGKFFTVTRSGAYIPAIAEYQVKAAAVGQTYLASNYPMDGNKGTMVWIYRYMLTPGTHINIPGAGAGGSVLQTTIARGPYRTDVNNPTSEIRVGISDPIQTAIPAGTQLSATYPISFRSPA
Physico‐chemical
properties
protein length:793 AA
molecular weight: 85918,44780 Da
isoelectric point:5,21790
aromaticity:0,09458
hydropathy:-0,14540

Domains

Domains [InterPro]
DC_1894
ATT
1–276
DC_1894 IPR023882 DC_0045
IPR011050
STR
201–464
IPR011050
YP_009821645.1
1 793
Architecture
ATT
STR
RBD
ATT 1-276 | STR 277-465 | RBD 484-792 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009821645.1
1 793
Domain Start End Length (AA) Confidence
N-terminal 1 198 198 0,9932
Central domain 199 660 463 0,9943
C-terminal 661 793 132 0,9310
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-198
Central
199-660
C-terminal
661-793

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage Lidtsur
[NCBI] 		2562235 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli str. K-12 substr. MG1655
[NCBI] 		511145 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Escherichia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009821645.1 [NCBI]
Genbank nucleotide accession
NC_048177 [NCBI]
CDS location
range 34102 -> 36483
strand +
CDS
ATGGCGAACAGCTATAACACCTATGTGGCGAACGGGACGCAGACTGCGTTCCTCGTCACCTTTGAACAACGAGTGTTCACGCAGATTCAGGTGTACGTCAACTCTGAGCTACAGACTGGCGGCTACACCTACAACTCCGTGACCAAGCAAATCGTATTCACATATCCACCGACTGCTGGCGCTATTATCCGCTTGCAGCGGTACACTGACGAAACCCTGCTCAACAAGTTTGGGCAGGACGCCGCATTCACCGGGCAGAACCTTGATGAGAACTTTGAGCAGATTCTGTTCAAAGCAGAAGAGACTCAGGAGGCGTGGCAAGCTCCGTTAGACCGGGCGCTGCGCATCCCTAACTCTGAGGTGTCCATCAGTGCGCTGCCGACCGTGGCATTCCGTAAGAACAAGGCACTGGGCTTTGACGATAATGGTCAGCCCTTCATGATTCCTCTGGTGGATATTCCAGACTCCGCACTGGCTATCGCGCTGGCTATGCCGGACGGCGGCAAGTGGATTGGTACTCTGGCTGGTGGCACGTTCCTGAACCGTCAGGATACGGTGTGCCTGTCCGAGTTCACCAACAACTCTGCGTACGCTACTGTGTCTGCGGCGGTGCAGGCTTGCTTCGATTATGCAGCAGCCAACAACAAAGTCGTTGATGCTCGCGGCTGGGTAGGGACTCTCAATGCCAACGTTACCATGACCAATATTGAGGTGGTAGGCGGTACGTGGAAAGGCACCTCTGACGTATTCATCGTCAACTCACTGTTCCGCAACTTCAAAATCAACAACCTTCGTCTGCGTCCATACGGCGGCGACACTCGTATCCGCAACGGTCTATTTGATGGTAAGCCTACGCTGAGCAAGGTAGCGAGTATTATGCTCCAAGCAATCCCTGCCACTGGCACCATTGAGGTAACTGACTGTGAGTTCCGCAACGGTCTGTATGGTATCTTGCAGCAGGGTACTGGTTCAGTTATGACTCGTGGGCTGTTCCGCAACCTGTCGTTCTATGACATGGGCGGTGACGGTATTGAGCTTAACGTTGTCCAGAACCACTATGACGACGGCTGCTTGATTGAGAACATCGTGCTTGAGAATATCGACAGCACTGGTCAGGCTCCGATTAACAACTCCAACTGGGGTATTGGTATCGGCGTGGCTGGTAGCTCTCCGTATGGCCTCGACACGCCAGACAGCTATTACGCCAAGAACATCACTATCCGCAACGTCAAAGCGCGGCGCTGCCGTCAGGTTGTGCACTTCGAGCAGGTTCGTGACTCTCTGATTGAGAACATCGACGGCGACCCTGACCAGAACGTATCGAACGGCTCTGGCCTTACTATGGCTACTGTGCTGTGCTATGGTGCGCGTCGCGTAACCATCAATGGTGTGCGCGGTGAGCCTGTAGTCACGTCAGGTACTGACCCGCACAGCATCCGTATTGTGATGCTGGAGTGGGGTACTAACGCAGGTGTTGGTGCTCGCGGGCCATGTCAGCACATGACTGTGCGTAACGTGTCCTCGCGCAACGGGCGCTTCTATGCTGGCGTTGGCTGTCAGGACGTTGGGCTGGATAACACAGCTACGTTCGAGAACATCGACTGCTACAACTTCCGGCTGTTCGGTGTTGCTCGTGAGCTGAATCTGGCAAACATTACCTGCACAGTGTTCGACTGCATTGGCGATGACTCTGCTGGCGGTACGTCCTCTAACGGTTATCTGGCCGTAGGCCGCACCACACTCAACATGACCAACGTTAATGCGTTGTCTGAGGACTTGGTTGCTAACCAAGGATGGAGCCGCTGTGCGTACTCGTACGTGTCCAGCATTGCATCCAACGTGTATGCCCGTCCATATCCCCGTCAAGGTATTGACGGTGGTATCGGCGTACCCGTGTGGCCGAGCAACCGAGTGTACGTGATGCCTGATGCCACTGACGTAAACATCACTAACTGGGACGGTACTCAATTCCCTGCTGGACGCGAGTTCGTAGAGGGCGATTTGATTATCCGTACGGACGGTAAGTTCTTCACAGTAACCCGTAGCGGTGCTTATATCCCAGCTATTGCTGAGTATCAGGTTAAGGCTGCTGCTGTTGGACAGACTTATCTGGCAAGTAACTACCCAATGGACGGTAACAAAGGCACGATGGTCTGGATTTACAGGTACATGTTGACTCCGGGCACCCACATCAACATTCCGGGTGCTGGTGCTGGCGGTAGCGTATTGCAGACCACCATCGCTCGCGGGCCGTACCGTACGGATGTGAACAACCCAACCAGTGAGATTCGTGTCGGTATCTCTGACCCAATCCAGACGGCGATTCCGGCAGGTACGCAGCTCTCTGCGACTTACCCAATCTCGTTCCGTTCACCAGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7d42175d5e0242933ff59f8583d42ed0d6d250a75c4f142b61144198eabddf52
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2964
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50