Protein

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Genbank accession
YP_010097859.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,92
Protein sequence
MASNIRFKRSSVAGKVPTSVQLPVGEIAMNTRDGVLWMQEEAGRILNVRAGAALTEGKFIYVSTFGDDSDDGSSPLKAKKTIKSALGIATAGDTVEVAAGTFVEDNPLYVPPLVAIQGEDLRSTTVVPQNTNQDFFLVNNGVFLGNMSFVGSATTHAVVAFDPTRVGVVTQSPYVRNCTNFIPNSIGMRIDGDLRMGNNGVNGSMVVDSYTQYNQNGVGVSITNKAYAQLVSIFTINSGTSIFCGSGGQCDITNSNSSFGEYGLIGDNVSQLQYVGFTTSSSGIASDRLQIQLGNVKGIEITNFEYDPSTGYSTVTTSEAHNLVVGYAATLSGIGFTCPVSYGATHAVSAFTYDSATGLATVTTSTDHGLVAGGNYKLSGLEFTCTGSPGITTTIFPDGTQGYMFKVETLVDSTSFTSNVGAAGFTHTYVSGGIVRAGINTDIFPDPNIEPGKSGFVFDVKGVESSTKFNIYSGISSIPHTFVQAGIRTVTNFLYDNDSGISTVTVSKPHFLKVGDNVKLDSIEFSCSGSTGVTVNVSNVVYDNTVGIATITTSADHGVSLHKTVQLANIEFSCTSGGPPFTNIFPTALYDSNAAYGHDVFRVSSVNSSTEFEVNVGVSTIVHTYVSGGTATAGVTTTIFPDGSSNYGSIFEVTGITSTTFTIDVGIATFGHTYVSGGTARRAAVSKLYANRPYDGQVLFLDKLYKQLDKIDVTSPGQGYVSTPTVTVSDPEGLNGTTATAEATVENGKIKEITVTNNGSQYINNPTITLTGGSPTVSAGTTTGMRPLYYTIQEATQPDPYTGISTVVFDQVLNNPVGVGTTAFFYQVSLVLASSHSFEWIGSGGDLAGSRPRLGGVGIQSAEVVKRDGGLVVYTSTDQSGNFRIGDDVNINQVTGTISGRAFNQSLLNTVTPLIIALED
Physico‐chemical
properties
protein length:920 AA
molecular weight: 96390,91910 Da
isoelectric point:4,84407
aromaticity:0,08913
hydropathy:0,01641

Domains

Domains [InterPro]
DC_0066
STR
2–917
DC_0066
IPR012334
STR
47–357
IPR012334
IPR011050
STR
59–312
IPR011050
YP_010097859.1
1 920
Architecture
STR
STR 2-917 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010097859.1
1 920
Domain Start End Length (AA) Confidence
N-terminal 1 112 112 0,9658
Central domain 113 591 480 0,8285
C-terminal 592 920 328 0,0713
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-112
Central
113-591
C-terminal
592-920

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus virus S-PRM1
[NCBI] 		2100130 Uroviricota > Caudoviricetes > Pantevenvirales > Makelovirus > Makelovirus prm1
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010097859.1 [NCBI]
Genbank nucleotide accession
NC_055761.1 [NCBI]
CDS location
range 119846 -> 122608
strand +
CDS
ATGGCATCCAACATTCGATTTAAGAGATCTTCTGTAGCCGGAAAGGTCCCTACTTCCGTTCAATTACCTGTTGGTGAGATTGCGATGAACACCAGAGATGGTGTTCTTTGGATGCAGGAAGAAGCAGGAAGAATTCTCAACGTTCGTGCTGGTGCAGCACTAACTGAAGGTAAATTCATCTATGTTTCTACTTTTGGTGACGATAGTGATGATGGTAGTAGTCCACTCAAAGCAAAGAAAACAATTAAATCTGCACTAGGTATTGCCACCGCTGGTGATACTGTAGAAGTAGCTGCAGGTACATTTGTTGAAGATAATCCACTTTACGTTCCTCCTCTTGTTGCAATTCAAGGGGAGGATTTGCGTTCTACAACAGTAGTTCCTCAAAATACAAATCAAGACTTTTTCTTAGTTAACAACGGCGTATTCCTTGGTAACATGAGTTTTGTGGGTTCTGCCACAACTCATGCCGTTGTTGCTTTTGATCCAACTCGCGTTGGTGTTGTAACTCAGTCTCCATACGTTCGTAACTGTACGAATTTCATTCCTAACAGTATTGGAATGAGAATTGATGGTGATCTGAGAATGGGTAATAATGGTGTCAACGGCTCAATGGTTGTTGACTCTTATACTCAATATAATCAAAATGGTGTTGGTGTATCGATCACCAATAAAGCTTATGCACAGTTAGTTTCGATCTTTACAATCAACTCTGGAACAAGTATTTTCTGTGGTTCTGGTGGTCAGTGTGACATCACAAACTCCAACTCTTCTTTCGGTGAGTATGGATTGATTGGTGATAATGTAAGTCAACTTCAATATGTTGGATTTACCACCAGTTCATCTGGTATTGCAAGTGATAGACTTCAAATTCAACTAGGTAATGTAAAGGGAATTGAGATCACTAACTTTGAATATGATCCATCTACAGGATATTCAACTGTAACGACAAGTGAAGCTCATAATCTAGTCGTTGGATATGCTGCAACACTCAGTGGTATTGGATTTACATGTCCAGTAAGTTATGGTGCAACACATGCAGTTAGTGCATTTACATATGATTCTGCAACTGGTCTTGCTACAGTAACTACATCAACAGATCATGGATTGGTTGCTGGTGGTAACTATAAGTTATCTGGTCTTGAATTTACTTGTACTGGTTCTCCTGGAATTACGACAACTATTTTCCCTGATGGAACTCAGGGATATATGTTTAAAGTGGAGACTTTGGTAGATTCAACTTCATTTACATCTAATGTAGGTGCAGCTGGATTTACTCATACTTATGTTTCTGGTGGTATTGTTCGTGCTGGTATTAACACCGATATTTTCCCAGATCCAAATATTGAACCAGGAAAGTCTGGATTTGTTTTTGATGTAAAGGGTGTTGAGAGTTCTACCAAGTTTAATATTTACTCTGGTATCTCTAGTATTCCACACACATTCGTTCAGGCTGGAATTAGAACTGTTACTAACTTCTTATATGACAACGACTCTGGTATATCCACGGTAACAGTTAGTAAACCACACTTCCTTAAAGTTGGTGACAATGTAAAGTTAGATAGTATTGAATTTAGTTGTTCTGGATCTACAGGTGTCACGGTAAATGTCTCAAATGTTGTATATGATAACACTGTAGGTATTGCTACGATTACAACTTCTGCTGATCATGGAGTCTCGTTGCATAAAACTGTTCAACTTGCAAACATCGAATTCAGTTGTACTTCTGGTGGTCCACCATTTACGAATATTTTCCCAACTGCATTGTATGATTCAAATGCAGCTTATGGTCATGACGTATTCCGTGTCAGTTCTGTAAACAGTTCGACCGAATTTGAAGTTAATGTTGGTGTTTCTACAATTGTTCACACTTATGTTTCTGGTGGTACTGCCACCGCTGGTGTGACAACTACCATTTTCCCTGATGGTAGTTCTAACTATGGAAGTATCTTTGAAGTTACTGGTATTACTAGTACTACTTTTACTATTGATGTCGGTATTGCAACATTTGGTCACACATATGTAAGTGGAGGTACTGCAAGACGTGCTGCAGTTTCTAAACTGTATGCAAACCGCCCATATGACGGTCAGGTATTATTCCTTGATAAACTGTATAAACAGTTGGACAAGATTGATGTTACAAGTCCTGGTCAAGGATATGTTTCTACTCCAACAGTTACAGTTTCCGATCCTGAAGGACTTAATGGAACTACAGCGACTGCAGAAGCTACAGTAGAAAATGGTAAGATCAAAGAGATCACGGTTACGAACAATGGTTCTCAATATATCAACAATCCAACAATTACGTTGACTGGCGGTAGTCCAACAGTTTCTGCGGGAACCACCACTGGAATGAGACCTCTGTATTACACAATCCAGGAAGCTACACAACCAGATCCTTACACAGGTATATCTACGGTTGTGTTTGACCAGGTTTTGAATAATCCTGTTGGGGTTGGAACTACGGCTTTCTTCTATCAAGTAAGTTTGGTTCTTGCATCTTCTCACTCTTTTGAATGGATTGGATCTGGTGGTGATTTAGCTGGGTCTCGTCCTAGACTTGGTGGTGTTGGTATTCAAAGTGCTGAAGTTGTCAAACGAGATGGTGGGTTGGTTGTTTATACATCAACCGATCAATCAGGTAACTTTAGAATTGGTGATGATGTAAACATTAACCAGGTCACAGGAACGATCTCTGGTAGAGCTTTCAACCAGAGTCTTCTAAATACAGTAACACCTCTAATCATCGCTCTGGAAGACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0ccc031237273e90da4073e47ed677f08eab9aa18683dbc249f2d4186755869c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6691
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of the cyanophage S-PRM1 isolated from Singapore coastal waters Chenard,C., Kolundzija,S. and Lauro,F.M. 2017-12 — GenBank