Protein

View in Explore
Genbank accession
AGC34300.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,72
TF
Evidence RBPdetect2
Probability 0,59
Protein sequence
MSGTKLNDDGLKIEAQDLSLLSPTNEDDNRLFNHDGSSAITLAGGTTTSNAGYYMWDNAAGAWAPMKENVERVGGYTASEIAKLAENESVSGLWDFGQNPTVNGNPVFHGGNKIDSTDLAFDPAEQVELDAHVSRSNPHNTTASDVGAAPESHATDKSNPHSVTAAQVGALENPISSAVNMNGNYLDNRKGVFFGYGASHGGMDGGVHANVANNVVVSNGYSKNSSSSVQVNRSGLYKINYSINFHQTGGGGRAVMAARVEVNGSAKGGQSESRCYIRNTADGDMNHVTAECVLNLNSGDDIQVYAWRHHGVTGHDITHGRISMEYLG
Physico‐chemical
properties
protein length:328 AA
molecular weight: 34633,20410 Da
isoelectric point:5,25922
aromaticity:0,06707
hydropathy:-0,51280

Domains

Domains [InterPro]
DC_1552
STR
1–150
DC_1552 IPR008983
DC_2167
RBD
130–327
DC_2167
AGC34300.1
1 328
Architecture
STR
RBD
STR 1-150 | RBD 151-327 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGC34300.1
1 328
Domain Start End Length (AA) Confidence
N-terminal 1 117 117 0,7983
Central domain 118 316 200 0,0356
C-terminal 317 328 11 0,9944
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-117
Central
118-316
C-terminal
317-328

Taxonomy

  Name Taxonomy ID Lineage
Phage Halorubrum sodomense tailed virus 2
[NCBI] 		1262527 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Halorubrum sodomense
[NCBI] 		35743 cellular organisms > Archaea > Methanobacteriati > Methanobacteriota > Stenosarchaea group > Halobacteria

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGC34300.1 [NCBI]
Genbank nucleotide accession
KC117376 [NCBI]
CDS location
range 22228 -> 23214
strand +
CDS
ATGAGCGGGACTAAGTTGAACGACGATGGGCTGAAGATTGAGGCTCAAGACCTCTCGCTTCTCAGCCCGACGAACGAGGACGACAACCGGCTGTTCAATCACGACGGCTCATCGGCTATCACACTCGCTGGCGGAACCACGACCTCGAACGCGGGGTACTACATGTGGGACAACGCCGCCGGGGCTTGGGCACCGATGAAAGAGAACGTCGAGCGAGTCGGCGGCTACACGGCTTCTGAAATCGCCAAACTGGCCGAGAACGAGTCTGTCTCCGGGCTGTGGGACTTCGGACAGAACCCCACGGTTAACGGAAACCCGGTGTTTCACGGCGGAAACAAGATAGACTCGACCGACCTCGCTTTCGACCCCGCCGAGCAAGTCGAACTCGACGCTCACGTTTCGCGGTCGAATCCTCACAACACAACGGCAAGCGACGTAGGCGCGGCCCCGGAATCTCACGCTACAGACAAGAGCAATCCACACAGCGTGACCGCGGCGCAGGTTGGAGCATTAGAAAATCCAATCTCGTCCGCGGTAAATATGAACGGGAACTACCTCGACAACCGCAAGGGAGTGTTCTTCGGCTATGGAGCATCACACGGCGGGATGGACGGAGGAGTTCACGCAAACGTTGCTAACAACGTTGTTGTTTCTAATGGCTACTCCAAAAATTCTTCTTCTTCTGTTCAAGTAAACCGCTCTGGTCTGTACAAAATTAACTACTCCATCAATTTCCATCAAACTGGAGGAGGTGGGCGAGCCGTTATGGCGGCCCGCGTTGAAGTTAACGGGTCAGCAAAGGGAGGCCAAAGCGAATCTCGGTGTTACATCCGCAACACAGCAGATGGTGACATGAACCACGTCACCGCAGAGTGCGTGTTAAATCTGAACTCTGGTGACGACATCCAAGTTTATGCTTGGAGGCATCACGGAGTTACTGGACACGACATCACGCACGGTCGAATTTCGATGGAGTATCTTGGCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
cb2d35706ddac83367ac245b2a0d924a1a2a6b4fba95e49abaf93518be6c1f0c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8110
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Insights into head-tailed viruses infecting extremely halophilic archaea Pietila,M.K., Laurinmaki,P., Russell,D.A., Ko,C.C., Jacobs-Sera,D., Butcher,S.J., Bamford,D.H. and Hendrix,R.W. 2013 23283946 GenBank