Protein

View in Explore
Genbank accession
WYW04390.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,91
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MATTPKTVRTYPINSVARDFTIPFEYLARKFVVVTLIGATRRELVLNTDYRFSTGTIITTTKAWGPGDGFNLIEIRRLTSATERLVDFADGSILRAYDLNISSVQSLHIAEEARDLTADTIGVNNDGNLDARARRIVNLADAIEDGDAVNLRQQKTWAGSALNQAQAAAQSAAQAAQSAAQALANKQATDQNLAATVQNNSQSLTNNQQSYQNLVAAQQQAAASAASAGASANSATASEASRQASAVSASQSYTDANRSKTEADRAKTEADKLGNFNALGGALSSVNGTQVFWKGEQVSMNAGFQARTGADNEANFTMTDGNGNDPIRLVRTSDRRVHLYGNASGDGDRMVWGSTDVSTPKNFSVGGTLVANGQATFNGNVTTTGLTSTGEIVANGTVRSKSGVVQSFAPNQSANCHFWFYDSVGNSRGVLYADQSGVVRVQAGGALTATFGTDGVTQLNALNANRSGGQSYFYSPYAQIDGAMYGTCNLQLQGTGGGVAALGFHNAGRVAGALWLNNDNQLWWMQNSGNNAQMTTNQNVMNHIGGMTADQVGSIASMYNQSGTNLGIGGGVAGGSLRYASHNNVSGQGGSGSWRCLGSGNNGGVCNYVRYA
Physico‐chemical
properties
protein length:612 AA
molecular weight: 64041,37130 Da
isoelectric point:7,01299
aromaticity:0,07190
hydropathy:-0,33807

Domains

Domains [InterPro]
IPR005604
ATT
1–131
IPR005604
DC_0657
STR
1–609
DC_0657
WYW04390.1
1 612
Architecture
ATT
STR
ATT 1-131 | STR 132-609 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WYW04390.1
1 612
Domain Start End Length (AA) Confidence
N-terminal 1 315 315 0,8622
Central domain 316 514 200 0,3246
C-terminal 515 612 97 0,9557
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-315
Central
316-514
C-terminal
515-612

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PpuP-Kurepalu-2
[NCBI] 		3132681 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas putida KT2440 and
[NCBI] 		1481724 Heterolobosea > Eutetramitea > Lyromonadida > Psalteriomonadidae > Monopylocystis >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WYW04390.1 [NCBI]
Genbank nucleotide accession
PP496477.1 [NCBI]
CDS location
range 35573 -> 37411
strand +
CDS
ATGGCTACGACACCTAAGACGGTGCGGACCTACCCTATCAACTCCGTCGCCCGTGACTTCACCATTCCGTTCGAGTATCTCGCCCGAAAGTTTGTGGTAGTTACTCTGATCGGCGCGACCCGTAGGGAATTGGTTCTAAACACCGACTACAGATTTTCCACCGGAACCATCATCACGACTACCAAAGCGTGGGGTCCGGGTGACGGTTTCAACCTGATCGAGATTCGCCGCCTGACCTCTGCAACTGAGCGTCTGGTGGACTTCGCGGATGGCTCGATCCTGCGCGCTTACGACCTGAACATCTCAAGCGTTCAATCTCTGCACATCGCTGAGGAAGCCCGTGACCTGACCGCTGACACAATCGGCGTGAACAACGATGGCAACCTCGACGCTCGTGCTCGACGCATCGTGAACTTGGCTGACGCTATCGAGGACGGTGACGCTGTGAACCTGCGCCAGCAGAAGACTTGGGCCGGGTCTGCACTGAACCAAGCTCAGGCGGCTGCTCAATCGGCTGCTCAAGCTGCACAGTCTGCCGCTCAGGCGCTTGCCAACAAACAGGCAACTGACCAGAACCTTGCGGCGACCGTTCAGAACAACTCTCAGTCCCTCACGAACAACCAGCAGTCCTATCAGAATCTCGTAGCTGCCCAACAGCAAGCCGCTGCTTCCGCTGCAAGTGCCGGTGCAAGTGCGAACTCTGCGACCGCCTCAGAGGCGTCCCGTCAGGCTTCTGCTGTGAGTGCCTCGCAGTCCTATACGGATGCCAATCGGTCGAAGACTGAGGCTGACCGTGCGAAGACTGAAGCGGACAAGCTGGGCAACTTCAACGCCCTCGGTGGTGCCCTGTCGTCCGTCAACGGGACTCAGGTCTTCTGGAAGGGTGAGCAGGTATCCATGAATGCTGGCTTCCAAGCTCGCACGGGTGCCGACAATGAGGCGAACTTCACGATGACCGATGGGAACGGCAACGACCCTATTCGTCTTGTTCGCACCTCTGACCGCCGAGTCCACCTTTATGGCAACGCCTCGGGTGACGGTGATCGGATGGTCTGGGGATCGACTGACGTGTCCACGCCTAAGAACTTCTCAGTGGGCGGTACGTTAGTCGCGAACGGTCAGGCGACATTCAACGGAAATGTGACCACGACTGGACTCACATCGACCGGTGAGATCGTGGCTAACGGAACCGTCCGCTCTAAGAGTGGCGTGGTCCAGTCGTTCGCCCCGAACCAATCTGCCAACTGTCACTTCTGGTTCTACGACAGCGTGGGCAACTCCCGTGGGGTTCTCTATGCGGACCAATCCGGTGTCGTCCGGGTACAGGCTGGTGGTGCCTTAACGGCGACCTTCGGGACCGATGGCGTGACTCAACTCAACGCCCTCAACGCCAACCGCTCTGGCGGTCAGTCGTACTTCTACAGCCCATATGCCCAGATCGACGGGGCCATGTATGGCACCTGCAACCTGCAACTACAAGGCACTGGTGGTGGCGTGGCTGCGCTGGGCTTCCACAACGCTGGCCGTGTGGCTGGTGCCCTGTGGCTGAACAACGACAACCAGCTTTGGTGGATGCAGAACTCTGGCAACAACGCCCAGATGACGACCAACCAGAACGTGATGAACCACATCGGCGGCATGACCGCTGACCAAGTGGGCTCTATCGCTTCCATGTACAACCAGTCGGGGACAAACCTCGGGATTGGTGGTGGTGTCGCTGGTGGCAGTCTGCGCTATGCCTCTCACAACAACGTGTCTGGGCAGGGAGGTTCCGGTTCGTGGCGCTGCCTCGGTTCGGGCAACAACGGCGGCGTGTGCAATTACGTCCGCTACGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
138b5db0c6ce00c38e8ec3c32c4a045ecbf5a308d75c2e78169d83efc750443a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6748
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of a phage collection against Pseudomonas putida Brauer,A., Rosendahl,S., Kangsep,A., Rikberg,R., Lewanczyk,A.C., Horak,R. and Tamman,H. — — GenBank