Protein

View in Explore
Genbank accession
XYY22425.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MTRVTGSYESLIRGVSEQVAHQRYPGQHWAQDNMISDPVRGLVRRWGSVMQDEAATTAVDNAATTADVQDFRETSLYLGDVEYSFMHRRRKRPEGSTAGGLVMVNKTTRKLTPVVVGPTDAVTAEVLIGGINSVTSAGRFVMMAAAAKVVDHTEAITWDKDARGVAYVTVGNYSRTYTVTVKHANGTEYHVEYVTPASYYPGTLDTSDILVGDAAYVKKVNDRVYAYQSAVNKWIGTAAAAIVPSAIVVELRKRLIAKIKKPEDPVNDADGNPIIYGVEFPEADVGTVDNHLTFTNITELAITDGANNNTVGAVLHEVESVADLSVRHMAGKVIKVSPRMTSGGSGQAYYVKARAINSGTGWEKVVWEEAAGTLVTPGFVCLIGTMVGDTFYLASSATILKEISGVDTPGWVPSSSGDFDSQALPAMFGKTITYMRLFQDRLMLVSGSTVLLSKTGDYFNFFRASALQIANDDPIEMYALGSDDDVITDGALLDRDLLLFGNVWQYAISGREALLPANPYIAIQSSYADSNHCSPVSAGNLVFYTQPRDHKLTVQQMQTGAYAGTVSTFEVTQQLSKYLAGSPTALVATTSPSALFVRTSGLTNGVYVFSYLDAPGQTERLFDSWSRWTWAPELGPTVGITGKDGALLTVTLRKGMEGCVYVLDEFTLAGSLSDNPHLDSIRPAESAGNMARGSPIQDALSVVLDKSAGDFFLIGRAANEYDRLATEFPDFINSIKIGANFDGHVTVTNPFMRDRDGKPILDGRLTLGNFKVTVVDSAAMKVFVQDLQTLDMQEVEVLNWVARAAGVWVLNTQQIMETATTTAGVYKETRACKVRFQSRSWLPFGLSAMEWSGQFFSRRN
Physico‐chemical
properties
protein length:860 AA
molecular weight: 93401,37290 Da
isoelectric point:5,36182
aromaticity:0,09186
hydropathy:-0,07965

Domains

Domains [InterPro]
IPR058003
TTP
1–631
IPR058003 IPR058003
DC_0058
STR
1–860
DC_0058
XYY22425.1
1 860
Architecture
STR
STR 1-860
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XYY22425.1
1 860
Domain Start End Length (AA) Confidence
N-terminal 1 200 200 0,8434
Central domain 201 402 203 0,1967
C-terminal 403 860 457 0,2700
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-200
Central
201-402
C-terminal
403-860

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Ppr_SeaP4
[NCBI] 		3446277 Viruses >
Host Pseudomonas protegens Pf-5
[NCBI] 		220664 Pseudomonadota > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas > Pseudomonas protegens

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYY22425.1 [NCBI]
Genbank nucleotide accession
PV763896 [NCBI]
CDS location
range 5345 -> 7927
strand +
CDS
ATGACACGAGTGACTGGGAGTTACGAATCCCTGATCCGTGGTGTGTCGGAGCAAGTGGCGCACCAGCGGTATCCCGGCCAACACTGGGCGCAGGACAACATGATTTCGGACCCGGTGCGCGGCCTTGTGCGGCGCTGGGGTTCGGTTATGCAGGACGAAGCGGCGACAACCGCAGTGGACAACGCGGCCACAACTGCTGACGTGCAGGACTTCCGGGAGACATCGCTGTACCTCGGAGACGTTGAGTACAGCTTCATGCACAGGCGGCGGAAGCGGCCCGAGGGCAGCACGGCTGGCGGTCTGGTGATGGTCAACAAGACTACCCGGAAGCTAACGCCGGTTGTCGTCGGACCCACGGACGCGGTGACAGCAGAAGTGCTGATCGGCGGTATCAACAGCGTGACGAGTGCAGGCCGGTTCGTGATGATGGCTGCGGCGGCAAAGGTCGTTGACCACACGGAAGCGATCACTTGGGACAAGGATGCACGAGGCGTTGCGTATGTGACGGTGGGTAACTACTCCCGGACGTACACAGTGACCGTGAAGCATGCCAACGGTACAGAGTACCACGTTGAGTACGTTACTCCGGCGAGCTACTATCCGGGAACACTTGACACCAGTGACATCCTCGTGGGTGACGCTGCGTACGTCAAGAAGGTTAACGACCGGGTGTATGCTTACCAATCCGCTGTGAACAAGTGGATCGGTACGGCGGCTGCGGCTATCGTGCCATCGGCAATCGTCGTGGAGCTTCGCAAACGGCTGATCGCCAAGATCAAGAAGCCAGAAGATCCTGTAAACGATGCAGACGGCAACCCGATCATCTACGGCGTTGAGTTCCCGGAAGCGGACGTGGGCACGGTGGACAATCACCTGACGTTCACGAACATCACGGAACTGGCTATCACTGACGGTGCGAACAATAACACTGTAGGCGCTGTGCTGCACGAGGTTGAAAGCGTTGCTGACCTAAGCGTTCGGCACATGGCGGGCAAGGTCATCAAGGTCAGTCCACGCATGACCAGTGGCGGCAGCGGGCAGGCGTACTACGTCAAGGCTCGGGCCATCAACAGCGGTACGGGCTGGGAGAAAGTGGTTTGGGAGGAAGCAGCGGGAACGCTCGTGACTCCGGGATTCGTGTGCTTGATCGGCACGATGGTCGGTGACACGTTCTACCTCGCAAGCTCCGCGACGATCCTCAAGGAGATCAGCGGCGTGGACACTCCGGGTTGGGTTCCCAGCTCGTCCGGTGACTTCGATAGTCAGGCGCTGCCAGCGATGTTCGGCAAGACCATCACGTACATGCGGCTGTTCCAAGACCGACTAATGCTGGTGTCTGGCTCCACGGTGCTGCTGTCCAAGACGGGTGACTACTTCAACTTCTTCCGTGCCTCGGCATTGCAGATTGCGAACGACGACCCGATTGAAATGTACGCACTGGGCTCTGATGATGACGTTATCACTGATGGAGCGTTGCTTGACCGGGACTTGCTGCTGTTTGGTAACGTCTGGCAGTACGCAATCAGCGGGCGGGAAGCATTGCTCCCGGCTAACCCGTACATCGCGATTCAGTCCAGCTACGCCGACAGCAACCACTGCTCGCCAGTGTCTGCCGGTAACTTGGTGTTCTACACTCAGCCGCGAGATCACAAGCTGACGGTGCAGCAGATGCAGACTGGCGCTTACGCCGGTACGGTCAGCACCTTTGAGGTGACGCAGCAACTGAGCAAGTATCTGGCTGGCTCGCCTACCGCGCTGGTGGCAACGACTTCGCCCTCGGCGCTGTTCGTACGTACCAGCGGCCTTACCAACGGCGTGTACGTGTTCAGTTACTTGGACGCACCGGGCCAGACGGAACGGCTGTTCGATAGCTGGAGCCGCTGGACGTGGGCACCGGAGCTTGGTCCGACTGTCGGGATCACTGGCAAGGACGGCGCACTGCTTACGGTGACGCTGCGCAAGGGCATGGAAGGTTGCGTGTACGTGCTGGACGAGTTCACCCTCGCCGGTTCGCTGAGCGACAACCCGCATCTGGACAGCATCCGCCCAGCGGAGAGCGCAGGCAACATGGCCCGTGGTAGTCCGATTCAGGACGCACTGTCGGTTGTGCTGGACAAGTCCGCTGGCGACTTCTTCCTCATTGGTCGAGCCGCTAACGAGTACGACAGGCTGGCGACGGAGTTCCCGGACTTCATCAACAGCATCAAGATCGGCGCGAACTTCGACGGACACGTTACCGTAACCAACCCGTTCATGCGGGACAGAGACGGTAAGCCGATCCTCGACGGGCGCTTGACCTTGGGCAACTTCAAGGTGACGGTGGTTGACAGCGCAGCGATGAAAGTCTTTGTGCAGGATCTCCAGACCTTGGACATGCAGGAAGTCGAGGTGCTGAACTGGGTGGCACGAGCCGCTGGGGTTTGGGTACTCAACACACAGCAGATCATGGAGACTGCTACCACAACCGCTGGCGTGTACAAGGAAACGCGAGCTTGCAAAGTGCGCTTCCAGTCTCGCTCGTGGTTGCCATTTGGGTTGTCGGCCATGGAATGGTCCGGGCAATTCTTTAGCCGGAGGAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
acd1ccf5b141d7af08ac0b6fa18a9e073ab8124182e85ead9b81d3ee7d532799
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8776
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Pseudomonads coordinate innate defense against viruses and bacteria with a single regulatory system Brinkley,D.M., Bertolli,S.K., Gallagher,L.A., Tan,Y., Motha de Silva,M., Brockman,A., Zhang,D., Peterson,S.B. and Mougous,J.D. — — GenBank