Protein

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Genbank accession
AXC39326.1 [GenBank]
Protein name
VgrG protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect2
Probability 0,53
Protein sequence
MNDTRVGSRKNEGVVIKTRSGAQLLLSEASGDVLLINRDGTARIKFTGEGDIEMHCDKNINIRAGQDINMVAGRSYNIESGADFNARVGANTKLDLVGALDAKVGGQVVINAGADLRLVTAASLRMQSGSSTDITAGSNASISAATSANLIGSSSAIISGGGQTLTVNSGGNSGTAEFNAPNFRTPSAGLNDHIHDISAWVDAENHGSTVEPPRQGGGSGNSESPVQPEPANDVAPTLAPVQDTEAIQYVNYTTETEQVQTQDLMTSDPA
Physico‐chemical
properties
protein length:270 AA
molecular weight: 27824,12930 Da
isoelectric point:4,61785
aromaticity:0,02963
hydropathy:-0,32963

Domains

Domains [InterPro]
SSF69349
STR
47–166
SSF69349
SSF69349
STR
47–160
SSF69349
AXC39326.1
1 270
Architecture
STR
STR 47-166 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AXC39326.1
1 270
Domain Start End Length (AA) Confidence
N-terminal 1 124 124 0,3183
Central domain 125 259 136 0,3791
C-terminal 260 270 10 0,2972
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-124
Central
125-259
C-terminal
260-270

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage CMSTMSU
[NCBI] 		2267248 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AXC39326.1 [NCBI]
Genbank nucleotide accession
MH494197 [NCBI]
CDS location
range 303443 -> 304255
strand +
CDS
GTGAACGATACTCGTGTTGGTTCTCGTAAAAATGAAGGCGTTGTAATTAAAACACGTAGTGGTGCACAGTTGTTGTTATCTGAAGCCTCTGGTGATGTTCTTTTAATTAACCGTGATGGTACTGCACGTATTAAATTCACTGGTGAAGGTGACATTGAAATGCACTGTGATAAGAATATTAACATTCGTGCAGGACAAGATATTAACATGGTTGCGGGTCGCTCATATAATATTGAAAGTGGAGCAGACTTCAATGCTCGTGTTGGTGCAAACACTAAACTAGATTTGGTTGGTGCATTGGATGCTAAAGTTGGTGGTCAGGTTGTTATTAACGCTGGAGCAGATTTACGTTTAGTAACAGCAGCTTCATTACGTATGCAAAGTGGTAGCAGTACTGATATAACTGCTGGTTCTAATGCGTCAATCTCTGCTGCTACCAGTGCTAATCTTATTGGTTCTTCATCAGCTATTATTAGTGGTGGTGGTCAAACCCTTACTGTTAACAGTGGTGGTAATAGTGGTACTGCTGAATTTAATGCACCAAACTTCCGCACCCCATCTGCTGGCTTGAATGATCATATACATGATATATCGGCTTGGGTTGATGCAGAGAATCACGGCAGTACTGTTGAACCTCCACGTCAAGGTGGTGGTAGTGGGAATAGTGAATCCCCAGTTCAACCCGAACCTGCTAATGATGTAGCTCCAACTTTAGCTCCAGTACAGGACACTGAAGCAATTCAATATGTAAATTATACAACAGAAACAGAACAAGTTCAAACACAAGATTTAATGACTTCTGATCCGGCATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
4db5fdd8a39f22087c249488822720d99e663cae836cd1cd28d5eeb1a92cea68
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7180
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome Sequence of Escherichia phage CMSTMSU Lelin,C., Thirumalaikumar,E., Abinaya,A., Paul,S., Rashmi,R., Arun,A., Sudhakar,S. and Citarasu,T. 2018-10-11 — GenBank