Protein

View in Explore
Genbank accession
XCO41656.1 [GenBank]
Protein name
tail collar fiber protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,90
Protein sequence
MSNNTINHVSDKSIYVTFDPTGTDWPDTITNVQDALGKIGSWARTDTGLPIATTSVRGIAQIATEADIDAGTDNNKIVTPKLLAYRMQNPKASQTVWGYTKYSTDAESTTVTNDVSSITPRSLNYVFNNRKGTESVWGSSKIATTAQAVAGTDNTVTMTPLKVKQAIASLVPVQSSATESSQGLVQLATVAQVQAGTIREGYAISPYTFIRLTATESNLGVIRIASQAEANAGTDDTKAITAKKLINTRATGSQFGVVKLATTVGYVANTALSSNAAVLPSDRNAVIYGSLYENSAIYNNKYQTWTDLDWHFPVGAIVMTGFQTDHGSLYICDGRSLNKNNYPLLFERIGYTFGGGGDWFNIPDCRGVAVRGHDRGRGLNPNRGYGTYEGDMLGWHEHPLQLIYQNGGNIPKWQAVYELKSAEKNDQSARVFDASITKATGVGGEETRMKNIALNYVIRTQ
Physico‐chemical
properties
protein length:461 AA
molecular weight: 49860,02860 Da
isoelectric point:7,69352
aromaticity:0,08460
hydropathy:-0,32863

Domains

Domains [InterPro]
DC_0176
STR
1–400
DC_0176
SSF69349
STR
242–321
SSF69349
IPR037053
ATT
302–366
IPR037053
SSF88874
STR
304–460
SSF88874
IPR011083
ATT
315–368
IPR011083
XCO41656.1
1 461
Architecture
STR
ATT
STR
STR 1-301 | ATT 302-368 | STR 369-460 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XCO41656.1
1 461
Domain Start End Length (AA) Confidence
N-terminal 1 371 371 0,6967
Central domain 372 450 80 0,0007
C-terminal 451 461 10 0,9963
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-371
Central
372-450
C-terminal
451-461

Taxonomy

  Name Taxonomy ID Lineage
Phage Klebsiella phage phi1_146054
[NCBI] 		3232233 Viruses >
Host Klebsiella pneumoniae
[NCBI] 		573 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XCO41656.1 [NCBI]
Genbank nucleotide accession
PP889503 [NCBI]
CDS location
range 169436 -> 170821
strand +
CDS
ATGAGTAACAATACAATCAACCACGTAAGTGATAAATCCATTTACGTGACATTTGACCCAACAGGTACTGATTGGCCTGATACCATAACCAACGTACAAGATGCGTTGGGAAAAATAGGTAGTTGGGCGCGTACTGATACTGGGCTTCCTATCGCAACAACGTCTGTTCGTGGTATTGCTCAGATCGCAACCGAAGCTGATATTGACGCTGGCACGGATAACAATAAGATTGTTACTCCGAAACTGTTAGCGTATCGTATGCAGAACCCTAAAGCATCACAAACTGTATGGGGTTATACGAAGTATTCGACTGATGCGGAATCTACAACCGTAACTAACGATGTATCGTCTATTACTCCGCGATCTCTGAACTATGTGTTCAATAACCGTAAAGGTACAGAATCGGTTTGGGGTTCTTCTAAAATTGCCACCACTGCACAGGCGGTTGCTGGTACAGATAACACTGTAACTATGACTCCGCTTAAAGTCAAGCAAGCGATCGCGTCCCTGGTTCCGGTTCAGTCAAGCGCGACCGAAAGCTCGCAAGGTTTGGTACAACTGGCAACAGTTGCACAGGTTCAGGCTGGTACGATCCGTGAAGGGTATGCAATTTCACCTTATACGTTTATTCGTTTAACTGCAACTGAAAGCAACCTGGGCGTTATTCGTATCGCATCACAGGCAGAAGCAAACGCGGGTACTGATGACACCAAAGCGATTACTGCGAAAAAATTAATCAATACCCGTGCAACTGGATCTCAGTTCGGTGTTGTCAAATTAGCAACAACTGTTGGTTATGTGGCAAACACTGCACTTTCTTCAAACGCTGCGGTATTACCTAGTGATCGAAATGCGGTAATTTACGGTTCTCTTTATGAGAATAGCGCAATATATAACAACAAATATCAGACGTGGACAGATCTTGATTGGCATTTCCCAGTAGGTGCTATTGTCATGACTGGTTTTCAGACTGACCACGGTAGTTTGTATATTTGTGATGGTCGCTCACTGAATAAAAATAACTATCCGTTACTTTTTGAGCGTATAGGTTATACATTTGGTGGTGGCGGTGATTGGTTTAACATTCCAGACTGTCGAGGCGTTGCAGTACGTGGTCATGACCGTGGGCGTGGACTAAACCCTAATCGTGGGTATGGTACATATGAAGGCGATATGTTGGGCTGGCATGAACACCCATTACAGCTTATCTACCAGAACGGCGGTAATATTCCTAAATGGCAAGCAGTTTACGAACTGAAAAGCGCCGAAAAGAATGACCAAAGCGCTCGCGTATTTGATGCTTCTATAACTAAAGCCACTGGTGTGGGTGGGGAAGAAACCCGCATGAAAAACATCGCATTAAACTACGTAATTCGTACTCAATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
de307a44bf794570e294e6ba0d937d111f9b562f7a15094a1537ead35f89889f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7240
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The complete genome of Klebsiella pneumoniae phages Fang,Q., Luo,H., Feng,Y. and Zong,Z. 2016-02 — GenBank