Protein

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Genbank accession

XPQ48387.1 [GenBank]

Protein name

long tail fiber protein distal subunit

RBP type

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,55

Evidence RBPdetect2

Probability 0,96

Protein sequence

MATLKQIQFKRSKVAGVNPTAAQLAEGELAINLKDRTLFTKDDLGNIISLGFAKGGDINGNVTQNGDYLQNGSYNLNGNQFVYAGKYIEFLPKIAGNGAWANQHSNKAPIFTDLSSTTSVSEYHPLIKQRYKDGTFSVGTLVSEGSFRVHYIDSTAPDNSKHWVFNRNGNFIVDSGSIEVRAGNISASGNINSANGIVSAPQVNTKTIVLDTKAFGQYDSQSLVQYVYPGTGEENGVNYLRKVRAKSGGTIYHEIASAQTGKNDEISWWTGNTLTTKLMGLRNDGAMVLRRSLAIGTITTDENTNNYGSPTPMGERYIALGDAATGLKYIKQGVYDLVGNWNSVASITPDSFRSTRKALFGRSEDQGGTWTMPGTNAALLSVQTQADTNNAGDGQTHIGYNSGGKFSHYFRGKGQTNINTQEGMEINPGILKLVTGSNNVQFYADGTISSIQPVKLDNELFLNNSNNIAGLKFGAPSKVDETRAIQWNGGTREGQNKNYVIIKAWGNSFNATGDRSRETVFQVSDSQGYYFYAHRKAPTGDETIGRIEAQFAGALNAKSINAIENFKVNGTSTLVGNVTMSNGLFVQGGSSITGQVKIGGTADALRIWNAEYGAIFRRSEDKLYIIPTPQNAGESGGISNLRPFYITLSNGKVSMDHDVDIGGGRFKVEASGITAGQRITINTASDAIRINAPTQESSNFIQGRKADVTKWYLGIGDGGNVVRMHSYTYSHGIALNSDTVDIAKPLRIGSTQIGTDGNITGGSGNFANLNTTLDRKVNVGTWSGGAAAGWYKFATVTMPQSTATIQFKITGGNGYNVNSPEQATITEIVLRTGNNNPKGINATLWGRTGNGFTNIATVNTSGDDYDVYLYVGTYADKLIVEYDYTANTRYISVVGLNGVNQTPVAELPTGHLRGQVYMMYSDAQIPYPVGAPIPWPSDSIPAGFALMEGQTFDTAAYPKLAIAYPTGTIPDMRGQTIKGKPSGRAVLSTEADGVKSHSHSASASNTDLGTKTTSSFDYGSKTTSSFDYGTKTSNTTGNHNHTVSGNTSSAGAHQHARSGPQVQGGIPTSIFYDGYNSAGPNGNAKFTATVSGATASSNMAKTSSDGAHTHSWSGTTSATGNHAHTVGIGAHSHTVGIGAHSHTVAIGSHGHTITVNSTGNTENTVKNVAFNYIVRLA

Physico‐chemical properties

protein length:	1177 AA
molecular weight:	125135,70420 Da
isoelectric point:	8,79853
aromaticity:	0,08666
hydropathy:	-0,40076

Domains

Domains [InterPro]

DC_0538
STR
1–781

DC_0538 IPR051934

G3DSA:6.20.80.10
STR
685–744

G3DSA:6.20.80.10 DC_2005 DC_0163

IPR048388
ATT
687–761

IPR048388 SSF88874 SSF88874

IPR037053
ATT
926–978

IPR037053

IPR011083
ATT
930–977

IPR011083

XPQ48387.1

1 1177

Architecture

STR

ATT

STR

ATT

STR

STR 1-686 | ATT 687-761 | STR 762-925 | ATT 926-978 | STR 979-1048 | STR 1089-1177

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_0538	STR	DC_0538	1	781	Novel HMM	DC_0538	Central	Low	Positional only	380 proteins / 380 hits
G3DSA:6.20.80.10	STR	G3DSA:6.20.80.10	685	744	Merged direct domain	G3DSA:6.20.80.10	Central	Low	Positional only	37 proteins / 37 hits
IPR048388	ATT	DC_0224	687	761	InterPro cluster	Tail fibre protein gp37, trimerization region	Central	Medium	Text match	404 proteins / 802 hits
DC_2005	STR	DC_2005	749	1027	Novel HMM	DC_2005	Central	Low	Positional only	76 proteins / 76 hits
IPR051934	Unmapped	-	834	1177	InterPro	Bacteriophage Tail Fiber Structural Protein	-	-	-	-
SSF88874	STR	SSF88874	922	1048	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits
IPR037053	ATT	IPR037053	926	978	Merged direct domain	Phage tail collar domain superfamily	N-terminal	Low	Positional only	37 proteins / 37 hits
IPR011083	ATT	DC_0235	930	977	InterPro cluster	Phage tail collar domain	C-terminal	Medium	Text match	1051 proteins / 1051 hits
DC_0163	STR	DC_0163	1089	1177	Novel HMM	DC_0163	Central	Low	Positional only	47 proteins / 47 hits
SSF88874	STR	SSF88874	1091	1176	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

XPQ48387.1

1 1177

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	789	789	0,0447
Central domain	790	988	200	0,5364
C-terminal	989	1177	188	0,9297

Note: Constraints were applied during segmentation.
Fixed 654 C-terminal predictions appearing before Central domain

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-789

Central
790-988

C-terminal
989-1177

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Escherichia phage vB_EQ1 [NCBI]	3388585	Viruses > unclassified bacterial viruses >
Host	Escherichia sp. [NCBI]	1884818	cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Genbank protein accession

XPQ48387.1 [NCBI]

Genbank nucleotide accession

PQ516281 [NCBI]

CDS location

range 110128 -> 113661
strand +

CDS

ATGGCTACATTAAAACAGATACAATTTAAAAGAAGCAAAGTGGCAGGAGTTAATCCTACTGCAGCACAATTAGCCGAAGGCGAATTAGCGATAAACTTAAAAGATCGAACTCTTTTTACTAAAGATGACCTTGGTAATATTATTAGCCTAGGCTTTGCTAAGGGCGGGGATATTAACGGTAATGTAACTCAAAATGGTGATTATTTACAAAACGGCTCATATAATCTTAATGGAAACCAGTTTGTTTATGCAGGAAAGTATATCGAATTCTTGCCTAAAATAGCTGGTAATGGCGCTTGGGCTAACCAACATTCGAATAAAGCCCCTATCTTTACAGATTTAAGTTCAACTACTTCTGTTTCAGAATACCACCCTTTGATTAAGCAACGTTATAAAGACGGTACTTTTTCGGTAGGTACACTAGTAAGCGAAGGCTCATTTAGAGTTCATTATATTGATTCTACAGCTCCAGACAATTCTAAACACTGGGTCTTTAACCGTAATGGTAATTTTATTGTAGATTCTGGTAGTATTGAGGTCCGCGCAGGTAATATTTCTGCATCAGGCAATATTAACTCTGCCAATGGTATAGTTTCTGCTCCACAAGTTAATACGAAAACCATTGTTTTGGACACAAAAGCATTCGGACAATATGATTCGCAATCATTAGTTCAATATGTTTATCCTGGAACAGGCGAAGAAAATGGTGTAAACTATCTTCGTAAAGTTCGCGCTAAATCAGGCGGAACTATTTACCATGAAATCGCTTCAGCTCAAACTGGTAAGAATGATGAAATTTCTTGGTGGACCGGAAATACACTTACTACTAAATTAATGGGTCTTCGTAATGATGGCGCAATGGTATTACGTCGTTCACTTGCTATTGGCACAATTACCACTGATGAAAATACTAACAACTATGGTTCTCCTACTCCAATGGGAGAAAGATATATTGCTTTAGGTGATGCTGCCACTGGTTTAAAATACATTAAGCAGGGTGTTTATGATTTAGTAGGTAATTGGAATTCTGTTGCTTCTATTACTCCTGATAGTTTCCGTAGTACTCGTAAAGCATTATTTGGACGCTCAGAAGACCAAGGCGGAACCTGGACAATGCCTGGAACCAACGCCGCACTTTTATCGGTTCAAACCCAGGCTGATACAAACAATGCAGGTGATGGTCAAACCCACATTGGATATAATTCTGGCGGTAAATTTTCCCATTATTTCCGTGGTAAAGGCCAAACCAACATTAATACACAGGAAGGTATGGAAATTAACCCAGGTATTCTTAAACTGGTAACTGGTTCTAATAACGTACAGTTTTATGCTGACGGCACTATTTCTTCTATCCAACCTGTTAAATTAGACAATGAATTATTTTTAAATAATTCTAATAATATTGCAGGCCTTAAATTTGGCGCCCCTAGCAAAGTTGATGAAACAAGAGCTATCCAATGGAACGGTGGTACTCGCGAAGGACAGAATAAAAACTATGTGATTATTAAGGCATGGGGTAACTCATTTAATGCCACTGGTGATAGATCTCGCGAAACGGTTTTCCAAGTATCAGATAGTCAAGGATATTATTTTTATGCTCATCGTAAAGCTCCAACCGGTGACGAAACTATTGGACGTATTGAAGCTCAGTTTGCTGGAGCTCTTAATGCTAAAAGTATTAATGCCATCGAAAATTTTAAAGTTAATGGAACAAGCACTTTAGTCGGTAATGTTACCATGTCTAATGGGTTGTTTGTCCAAGGTGGTTCTTCTATTACTGGGCAAGTTAAAATTGGTGGAACAGCTGATGCATTAAGAATTTGGAATGCTGAATACGGGGCTATTTTCCGTCGTTCTGAAGATAAGCTTTATATTATTCCAACTCCACAGAATGCTGGTGAATCAGGTGGTATTTCTAATTTACGTCCGTTCTATATTACATTAAGTAATGGTAAAGTTTCCATGGATCATGATGTAGATATCGGTGGCGGTAGATTTAAAGTAGAAGCATCTGGTATTACAGCAGGTCAGCGTATAACAATAAATACAGCATCAGATGCTATTAGAATAAATGCTCCAACACAAGAGTCTTCTAACTTCATCCAAGGACGTAAAGCAGATGTCACAAAATGGTATTTGGGTATTGGCGATGGCGGAAACGTCGTTCGTATGCATAGTTACACCTACTCCCATGGTATTGCATTAAACTCTGATACGGTTGATATAGCTAAACCTCTTAGAATAGGTTCAACCCAGATTGGAACCGATGGTAACATCACAGGTGGTTCTGGTAATTTTGCTAACTTGAACACTACTTTAGACCGTAAAGTTAATGTTGGCACTTGGTCGGGCGGAGCAGCTGCAGGTTGGTATAAATTTGCTACTGTAACTATGCCTCAAAGTACGGCAACCATCCAATTTAAAATTACAGGCGGTAATGGATACAATGTCAATTCACCAGAACAAGCCACAATTACTGAAATAGTTCTTAGAACAGGCAATAATAATCCTAAAGGTATTAACGCTACCTTATGGGGCCGGACTGGTAATGGATTTACTAATATAGCAACAGTTAATACTTCTGGCGATGATTATGATGTTTACCTATACGTTGGAACTTACGCGGACAAACTTATAGTCGAATATGATTATACAGCAAATACCCGTTATATTTCAGTAGTTGGTCTTAATGGTGTTAACCAAACACCTGTAGCGGAATTACCTACTGGTCATCTGCGTGGTCAAGTGTATATGATGTACTCCGATGCTCAGATACCTTATCCGGTCGGTGCTCCGATTCCATGGCCAAGCGATTCAATTCCTGCTGGATTTGCTTTAATGGAAGGTCAGACCTTTGATACCGCAGCTTATCCTAAGCTTGCTATCGCATATCCTACAGGTACTATTCCTGATATGCGTGGGCAAACTATTAAGGGTAAACCATCTGGGCGTGCTGTATTAAGTACAGAAGCAGACGGTGTTAAGTCACATAGCCATAGTGCAAGTGCATCAAACACAGATTTGGGTACTAAGACCACTTCTAGTTTTGATTACGGTAGCAAAACGACTTCAAGCTTTGATTATGGTACTAAGACCAGTAATACCACTGGCAACCATAACCATACAGTGAGTGGTAATACTAGTTCCGCTGGTGCGCACCAACACGCGCGTTCAGGTCCTCAGGTACAAGGCGGCATACCCACTAGCATATTCTATGATGGATACAATAGTGCGGGTCCAAACGGCAACGCTAAATTCACTGCAACCGTGAGCGGTGCTACTGCATCGTCGAATATGGCCAAAACTTCTTCAGATGGTGCCCACACTCATAGTTGGTCAGGAACTACTAGCGCTACTGGTAACCATGCTCATACTGTTGGTATTGGTGCTCATTCTCATACTGTTGGTATTGGTGCTCATTCTCATACTGTTGCAATTGGTTCCCATGGACATACAATAACTGTAAATAGTACAGGTAATACAGAAAACACAGTTAAAAACGTTGCTTTTAACTATATCGTTCGTTTAGCATAA

Genome Context

Tertiary structure

PDB ID

91abfadb0310dd8f4e1d4eaf67a0a8533e85149c31667f13879db404de1c571a

ColabFold

Source ColabFold

Method ColabFold

Resolution 0,2850

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence