Protein

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Genbank accession
YP_006488654.1 [GenBank]
Protein name
pre-neck appendage protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MINFNQLETLNKCLIDWNVNYSIYPYNGYTINEVLCQFFDAINKGIITINEYTKLICAIMNWIKDEGLKEEVEKALDKMIEDGTFDNILNEKLLGDIMERLDEIEDTNKEQNKSIEKNIADIEKNTSDISKLDKLVNAYGFVTVNMFGAKGDGETDDTKAFNDAITYCKERNVTSLFIPYGNYLTTGLINATGINIIGMYKPFIPFLEWDYTRPTSQLDHFEKYFKMCKGSVIGSKDNTIFVGGLDCKNIGLFGNRRKENQSGYLQLDGGYGKGVNMTDCFVSGFGGVGVKADYGLISSQFINTTITQCGKEGLYIGKVKGSYTGETNFLTIERCSIYRNESHGILADVMGRGFNVILNDFEFNGEPSDPQRPKPTSVDDMIFGCKLLVSGNGGFSSGAIKFEGNYTEETLGMLYIKNTGGTCQGVDINCNMAYPYNTTEMENIGIYLDGWLDRINISNNNMYFAKKLVLNGNQIQSIRTDIEPIHGGDTTGSVAWQVTTENGYNKIVMNSLYEEELFSKNGFITREGYHEDGITHYPFDKSNTHINGMEIDYDDARNPMVGKILILDGNYVGYVHSVSWTQGVINIRGNRVISRTNGNVKFVDCGGFITRDGTGTKRKMVVDWDGTVVGI
Physico‐chemical
properties
protein length:631 AA
molecular weight: 70573,82660 Da
isoelectric point:4,90108
aromaticity:0,10777
hydropathy:-0,33550

Domains

Domains [InterPro]
DC_0396
ATT
1–200
DC_0396 DC_0525
Coil
Unmapped
94–125
Coil IPR011050
IPR024535
ENZ
141–198
IPR024535
IPR012334
STR
142–518
IPR012334
YP_006488654.1
1 631
Architecture
ATT
STR
RBD
ATT 1-200 | STR 201-518 | RBD 519-631
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_006488654.1
1 631
Domain Start End Length (AA) Confidence
N-terminal 1 154 154 0,9059
Central domain 155 510 357 0,9769
C-terminal 511 631 120 0,7664
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-154
Central
155-510
C-terminal
511-631

Taxonomy

  Name Taxonomy ID Lineage
Phage Clostridium phage phiZP2
[NCBI] 		1162306 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Clostridium perfringens
[NCBI] 		1502 cellular organisms > Bacteria > Bacillati > Bacillota > Clostridia > Eubacteriales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_006488654.1 [NCBI]
Genbank nucleotide accession
NC_018084 [NCBI]
CDS location
range 6310 -> 8205
strand -
CDS
ATGATTAACTTTAATCAACTTGAAACATTAAACAAATGTCTTATAGACTGGAATGTTAACTATTCTATCTATCCATATAATGGTTACACAATTAACGAAGTCTTATGTCAGTTTTTCGACGCAATTAATAAGGGAATAATAACAATTAATGAGTATACTAAATTGATTTGTGCCATTATGAATTGGATTAAAGACGAAGGATTAAAAGAAGAAGTCGAAAAGGCGCTTGACAAAATGATAGAAGACGGAACTTTCGACAACATCTTAAATGAAAAACTTTTAGGCGATATCATGGAAAGATTGGACGAGATAGAAGACACTAATAAAGAACAAAATAAGTCAATAGAAAAAAATATTGCCGACATAGAAAAAAACACTAGTGATATATCTAAACTTGATAAACTTGTTAACGCGTATGGTTTCGTTACCGTTAATATGTTCGGCGCGAAAGGAGACGGAGAGACAGACGACACAAAAGCCTTCAATGACGCCATAACTTATTGTAAAGAAAGAAATGTTACAAGTTTGTTTATTCCATATGGAAATTACTTGACAACTGGGTTAATAAACGCTACAGGTATTAATATAATCGGAATGTATAAACCCTTTATTCCTTTCCTAGAATGGGATTATACGAGACCAACATCACAACTTGACCATTTCGAAAAATATTTTAAAATGTGTAAGGGTTCTGTTATTGGTTCAAAAGATAATACAATTTTTGTAGGTGGTTTAGACTGTAAAAACATTGGTCTTTTCGGTAATAGAAGAAAAGAAAATCAAAGCGGATATTTACAACTAGACGGTGGGTATGGAAAAGGTGTAAATATGACCGATTGTTTTGTTAGCGGTTTTGGTGGTGTAGGCGTTAAAGCCGACTATGGATTAATCAGTTCACAATTCATTAACACTACTATAACTCAATGCGGTAAAGAGGGTTTATATATTGGTAAGGTAAAGGGTTCTTATACAGGTGAAACAAACTTTTTAACCATAGAACGTTGTTCTATATATAGAAATGAAAGTCATGGAATATTGGCAGACGTCATGGGGCGTGGTTTCAACGTAATATTGAATGACTTTGAGTTTAACGGCGAACCGTCCGACCCTCAAAGACCTAAGCCAACATCTGTTGACGACATGATTTTTGGTTGTAAATTACTGGTGAGTGGTAATGGTGGATTTTCAAGTGGAGCAATAAAGTTTGAAGGAAACTACACAGAGGAAACTTTAGGTATGTTATACATTAAGAATACTGGTGGTACTTGCCAGGGCGTCGACATTAATTGTAATATGGCATATCCTTATAACACTACAGAAATGGAGAACATTGGAATTTATTTAGATGGTTGGTTAGATAGAATTAACATATCAAATAATAATATGTATTTCGCTAAAAAGTTAGTTTTAAATGGAAACCAAATTCAGTCAATAAGAACAGATATAGAACCAATACATGGTGGAGATACTACTGGAAGTGTAGCATGGCAAGTAACTACAGAAAACGGATATAACAAAATCGTAATGAATAGTTTATATGAAGAAGAACTATTTAGCAAAAATGGTTTCATAACTAGAGAAGGTTACCACGAAGACGGTATCACACATTACCCATTTGATAAATCAAACACTCATATAAATGGTATGGAAATTGATTACGACGACGCACGTAATCCAATGGTTGGTAAAATCTTAATACTAGACGGAAACTATGTCGGTTATGTTCATTCAGTTTCATGGACACAAGGGGTTATCAACATACGTGGTAATAGAGTTATCTCACGCACTAATGGTAATGTTAAGTTTGTAGATTGTGGAGGGTTCATCACTAGAGACGGAACAGGAACAAAAAGAAAAATGGTTGTCGACTGGGACGGTACAGTAGTCGGAATATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
854f823207b8921f7e27c9b1a04ca982f59b018596a45b2aa8b1e56db7f7b3af
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7206
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50