Protein

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Genbank accession
YP_009785694.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,75
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MTLVKTIPYQFMQGTNNLLDVQDSAQARINIGAASEVALSTSVAFLSARLGVWLDDYILAEETTWDNAIQRALSAAILAGTGIVFSANVYTFAHPVVLNMPSKGLTLQGAGVDRTVLSFPSAVTGEVQLTIQSATDWYDFKWFGMSVVGSFAGTLVQIGRDNYVDPLNVAYFQDLAILNSGVSNESTVGLKLNYVVNSNFIGVRANCYANGLGQNIGRALVIRQLGFSNFGSCSFGNASYGISFLDGFSNGNVWHACDVENVNIGIYNGSANAGRNTFVGGQYSLWTQFAVQAPVGSGSNSRIEIINGNFSQTTNLVDPANCVGVRISGLQWDVSTPSVPVSEGALQNTTGQSIDVYLSGGTGFSGVDVDGIQLGARQYVHLKPGQTIRLTYASAPSWIWRQSM
Physico‐chemical
properties
protein length:404 AA
molecular weight: 43075,78590 Da
isoelectric point:4,91483
aromaticity:0,10396
hydropathy:0,13564

Domains

Domains [InterPro]
IPR011050
STR
64–354
IPR011050
DC_1620
RBD
290–403
DC_1620
YP_009785694.1
1 404
Architecture
STR
RBD
STR 64-354 | RBD 355-403 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009785694.1
1 404
Domain Start End Length (AA) Confidence
N-terminal 1 67 67 0,9859
Central domain 68 329 263 0,9910
C-terminal 330 404 74 0,9809
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-67
Central
68-329
C-terminal
330-404

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage BF25/12
[NCBI] 		1698708 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Dickeya sp. B16
[NCBI] 		1778540 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Pectobacteriaceae > Dickeya >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009785694.1 [NCBI]
Genbank nucleotide accession
NC_047759.1 [NCBI]
CDS location
range 8649 -> 9863
strand +
CDS
ATGACGCTGGTTAAAACAATACCATATCAGTTTATGCAAGGGACGAATAATTTACTTGATGTTCAGGATAGTGCACAGGCCCGCATAAACATCGGTGCAGCTTCTGAGGTGGCGCTAAGTACTAGCGTAGCCTTCCTGAGTGCACGGTTGGGGGTGTGGCTTGACGACTATATATTAGCCGAAGAAACTACTTGGGATAATGCAATACAGCGCGCACTTAGCGCGGCAATTTTAGCGGGTACTGGAATTGTGTTCTCCGCTAATGTGTACACATTTGCACACCCCGTAGTACTGAATATGCCCAGTAAGGGTCTTACACTACAGGGCGCAGGTGTAGACAGGACGGTACTTAGCTTTCCAAGTGCGGTCACTGGTGAAGTACAACTGACCATACAGAGTGCAACAGACTGGTATGATTTTAAATGGTTTGGTATGTCTGTTGTAGGTTCTTTTGCGGGCACCCTAGTGCAGATAGGGCGGGATAATTATGTTGACCCCCTGAATGTAGCGTACTTTCAAGACCTGGCTATTCTTAACAGCGGTGTATCCAATGAAAGCACAGTTGGTTTAAAGCTCAACTATGTTGTTAATTCTAACTTTATTGGTGTACGTGCGAACTGCTATGCTAATGGTCTAGGGCAGAACATTGGCCGGGCATTAGTTATCCGACAACTGGGATTCTCTAACTTCGGTAGCTGTTCGTTCGGGAATGCCTCATATGGTATCTCGTTCTTGGATGGGTTCTCGAACGGGAATGTGTGGCACGCCTGTGATGTGGAGAACGTTAATATCGGGATTTATAATGGGTCTGCGAATGCAGGGCGTAATACCTTCGTAGGTGGGCAGTACTCATTGTGGACCCAGTTCGCGGTGCAAGCCCCTGTTGGCTCTGGTAGCAACTCCCGTATTGAGATTATTAATGGGAACTTCTCACAGACCACGAATTTAGTAGACCCCGCTAATTGCGTTGGGGTTCGTATTAGTGGTTTGCAGTGGGACGTCAGTACACCCTCAGTACCTGTCTCTGAGGGTGCTCTTCAGAATACTACGGGACAGAGTATTGATGTGTATCTATCAGGGGGTACAGGTTTTAGTGGTGTTGACGTTGATGGTATACAGCTCGGGGCACGGCAGTACGTACACCTGAAGCCAGGGCAGACTATACGCCTCACGTATGCTAGTGCTCCGTCTTGGATTTGGCGGCAGTCTATGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
bfe80bdf8a52fd01d6007b9381515a3586413f904e3c9b171e72bb2dc890455f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8535
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bateriophages against Dickeya spp. of Phalaenopsis orchids Dreo,T., Naglic,T., Alic,S., Peterka,M. and Ravnikar,M. 2015-10-29 — GenBank