Protein

View in Explore

Genbank accession

XMR00697.1 [GenBank]

Protein name

tail fiber protein

RBP type

Evidence GenBank

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,89

Protein sequence

MTSYNLYIADGSTTTYTYTFDQLDSSSVEVRLNNVIVTTGYTIDIVAKTVTFVGAPDAGTSIMLRRLTSVLLRYRFGQGAAFTGQNLDADFDQLLYAFQEYSDLTDYARGRTLRVPDSDPEIALIPSVAERAGKYLGFDSEGNPQVLLPDTDSAAGVAAELAKTNLSVDELHYRDAREAGCVLIGTFEAGTTITVANRTVLYRANGQQYKWAGALPKTVPLGSSPATTGGISAGAWVPLHDVSLREELAAPTGYTLVGGAASADSVSAVSADVAKLKYPTYRKASYYARQLAAGTPVVIDCHGDSTMWGATTINVGVQDPNNQPAVLSLTLTNLYGMANTVNNKGISGTTMAQMLAGTDGSGSTFEAKMASSSANIVYCNHCINDSQLANSIEQYRLNVVTFVETVRKYGKVPILVTPNLNPCITTYQIIDEAKSKRLRDYVQVMREVAHAMNCDLVDNYYYAEKTARYISPNTQVPDGAHPSTLMYAQMGRNLAIPLVCAHVLYKPWDKAGLANSTYFDNISLNRSYYVSGSRFGGGLTGRRQASATGVNHAVILDNPTDDTVLAVYGPQWGTGSVCCVGLSGNLLSTQLSGGLDQGTAIPIDYDAQYIPTVCQLYAGLQVISILATSDMGGAGTDFGYSGVGLIPREIVQPGMTAANQVRNRPLLCAGAVLRCVLNASSAGTLLTLVDINHSTALTITLASLGGALDVNYRGTVYNIAPGVTAGQYDCTITFNQNKSIAVQVGTASVTIPAGTTPIENCYVSDGARLHSVQYLG

Physico‐chemical properties

protein length:	776 AA
molecular weight:	82463,98760 Da
isoelectric point:	5,37529
aromaticity:	0,07990
hydropathy:	0,00722

Domains

Domains [InterPro]

DC_0126
ATT
2–119

DC_0126 DC_0682 DC_1804

IPR005604
ATT
3–106

IPR005604 G3DSA:2.10.10.80 SSF52266

IPR040775
RBD
185–239

IPR040775 IPR036514

IPR013830
ENZ
301–488

IPR013830

cd00229
ENZ
301–495

cd00229

XMR00697.1

1 776

Architecture

ATT

STR

ATT

STR

RBD

ATT 2-119 | STR 132-180 | ATT 181-250 | STR 251-501 | RBD 502-776

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_0126	ATT	DC_0126	2	119	Novel HMM	DC_0126	N-terminal	Low	Positional only	72 proteins / 72 hits
IPR005604	ATT	DC_0240	3	106	InterPro cluster	Bacteriophage T7 tail fibre protein-like, N-terminal domain	Central	Medium	Text match	1326 proteins / 1328 hits
DC_0682	STR	DC_0682	132	495	Novel HMM	DC_0682	Central	Low	Positional only	12 proteins / 12 hits
G3DSA:2.10.10.80	ATT	G3DSA:2.10.10.80	181	250	Merged direct domain	G3DSA:2.10.10.80	N-terminal	Low	Positional only	383 proteins / 383 hits
IPR040775	RBD	DC_0821	185	239	InterPro cluster	Tail spike TSP1/Gp66, N-terminal domain	Central	High	Text match	1281 proteins / 1285 hits
SSF52266	STR	SSF52266	296	495	Merged direct domain	SSF52266	Central	Low	Positional only	227 proteins / 227 hits
IPR036514	STR	IPR036514	299	501	Merged direct domain	SGNH hydrolase superfamily	Central	Low	Positional only	180 proteins / 180 hits
IPR013830	ENZ	DC_0001	301	488	InterPro cluster	SGNH hydrolase-type esterase domain	C-terminal	High	Text match	480 proteins / 783 hits
cd00229	ENZ	DC_0001	301	495	InterPro cluster	cd00229	C-terminal	High	Text match	480 proteins / 783 hits
DC_1804	RBD	DC_1804	495	776	Novel HMM	DC_1804	C-terminal	Low	Positional only	4 proteins / 4 hits

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

XMR00697.1

1 776

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	442	442	0,6165
Central domain	443	646	205	0,6610
C-terminal	647	776	129	0,7994

Note: Constraints were applied during segmentation.
Fixed 96 C-terminal predictions appearing before Central domain

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-442

Central
443-646

C-terminal
647-776

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Escherichia phage HHU8 [NCBI]	3384915	Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host	Escherichia coli H8 [NCBI]	2072452	Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Escherichia > Escherichia coli

Coding sequence (CDS)

Genbank protein accession

XMR00697.1 [NCBI]

Genbank nucleotide accession

PQ641135.1 [NCBI]

CDS location

range 7 -> 2337
strand -

CDS

ATGACAAGCTACAACCTGTATATTGCAGATGGTAGCACAACCACATACACGTATACCTTCGACCAGCTGGACTCCAGCTCGGTCGAGGTACGCCTCAATAACGTGATTGTGACCACTGGCTACACGATTGACATAGTAGCCAAAACTGTGACGTTCGTTGGTGCGCCAGACGCGGGCACTTCCATCATGCTTCGCCGCTTGACATCAGTCCTGCTGCGCTACAGGTTTGGACAGGGCGCTGCGTTTACCGGACAGAACTTGGATGCTGACTTCGACCAGCTGCTGTATGCCTTCCAAGAATACTCAGACCTGACGGACTATGCCCGTGGCCGCACCCTTCGCGTGCCGGACTCCGACCCAGAGATTGCGCTAATCCCTAGCGTGGCTGAGCGTGCTGGCAAGTATCTGGGCTTCGACAGCGAAGGTAACCCACAGGTGCTGCTGCCAGACACTGATTCTGCTGCTGGTGTAGCGGCAGAGCTGGCTAAGACCAACCTCAGTGTGGACGAGCTGCATTACCGCGACGCCCGTGAAGCCGGGTGTGTGCTGATTGGCACTTTCGAGGCGGGCACGACTATCACTGTAGCTAACCGCACAGTGCTGTATCGGGCTAATGGGCAGCAGTACAAGTGGGCCGGGGCATTGCCTAAGACGGTTCCGCTGGGCAGCTCTCCAGCTACCACAGGCGGTATCAGTGCTGGCGCATGGGTACCCCTGCATGACGTGTCGCTGCGTGAAGAATTGGCTGCTCCTACTGGCTATACGCTGGTTGGCGGCGCTGCTAGCGCAGACTCAGTTAGCGCAGTGTCAGCTGACGTAGCTAAGCTCAAGTATCCGACGTACCGCAAAGCGTCCTATTACGCCCGTCAACTGGCTGCTGGTACTCCTGTGGTAATCGACTGCCACGGTGACTCCACTATGTGGGGTGCCACTACAATCAACGTTGGCGTGCAAGACCCAAACAACCAGCCAGCTGTGCTCAGTCTGACGTTGACCAACCTTTATGGTATGGCTAACACCGTCAACAACAAGGGCATCTCAGGTACTACTATGGCTCAGATGTTGGCTGGTACCGATGGCTCAGGCTCTACATTCGAAGCTAAGATGGCCAGCTCGTCTGCTAATATCGTTTACTGCAACCACTGCATTAACGATAGCCAGCTGGCTAACAGCATTGAGCAGTACCGCCTCAACGTGGTAACGTTCGTCGAGACAGTGCGCAAGTACGGTAAGGTGCCAATCCTTGTGACGCCAAACCTTAACCCATGCATCACTACGTACCAAATCATTGACGAAGCCAAGTCCAAGCGTCTGCGCGACTACGTGCAGGTTATGCGCGAGGTGGCTCACGCCATGAACTGCGACCTAGTGGATAACTACTACTACGCAGAGAAGACTGCACGCTACATCTCGCCTAACACGCAGGTGCCGGACGGTGCGCACCCATCAACGCTGATGTATGCTCAGATGGGCCGCAACTTGGCTATCCCGCTTGTGTGTGCGCATGTGCTGTACAAGCCGTGGGATAAGGCAGGGTTGGCCAACTCGACGTACTTCGACAACATCTCGCTGAACCGCAGCTACTACGTAAGTGGCTCACGCTTCGGGGGTGGTCTTACTGGCCGCCGTCAGGCATCTGCTACTGGTGTGAACCACGCGGTTATTCTGGACAACCCGACCGACGATACGGTGCTGGCGGTCTACGGGCCACAGTGGGGTACAGGTTCTGTGTGCTGTGTCGGGCTGAGCGGCAACCTGCTGAGTACCCAGCTCAGTGGCGGCTTAGACCAAGGCACAGCCATACCTATTGACTATGACGCGCAGTACATACCAACGGTGTGTCAGCTGTACGCTGGTCTTCAGGTAATCTCTATTCTGGCTACTTCAGATATGGGTGGTGCTGGTACAGACTTCGGCTACTCTGGTGTTGGCTTGATTCCGCGTGAGATTGTACAGCCCGGTATGACAGCAGCAAATCAGGTACGTAACCGCCCACTGTTGTGTGCTGGTGCAGTGCTGCGCTGCGTGTTGAACGCATCTTCAGCAGGTACGCTTCTGACGCTGGTAGATATTAACCATTCTACTGCGCTTACAATTACACTGGCATCGCTGGGTGGCGCGTTAGACGTTAACTACCGTGGCACTGTGTACAACATTGCTCCGGGTGTTACTGCTGGTCAGTACGACTGCACTATAACGTTCAACCAGAATAAATCCATAGCTGTGCAGGTTGGTACCGCTTCAGTGACTATACCTGCTGGTACAACACCAATTGAGAACTGCTACGTATCCGACGGGGCACGCCTACACTCTGTGCAGTACCTTGGATAA

Genome Context

Tertiary structure

PDB ID

f8c0baad97e0a599d2654d87d55e0b225636d7e0163df0f00cdd9231f5e9a906

ESMFold

Source ESMFold

Method ESMFold

Resolution 0,6979

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Literature

Title	Authors	Date	PMID	Source
Complete genome of Escherichia coli phage HHU8	Han,P.	2013-06-12	—	GenBank

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence

Literature