Protein

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Genbank accession
AFI55336.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,82
Protein sequence
MNDINVDLVLLESQRHASRVEELTQEVGGKMVEIDKAKDDAIDEFNSKREEFEQATTTSINEFKTNQESKLGEIETEHSAKLDELEAAKQSIPTEVVNQWEADKPEFRQTLVTEAVQATADNASRAESALDSIILTGIIYTTVSEGVTNTSNGEFFKVISTSVDIYIDIYLNIGDGNSELIKTYPSTASIEYIKSDILKLANDLTDKGLLDYLGDGTVVPIITDKNLNILLGYNKQTQELIGAGLNKQRNGEELIVNYLGTEVVPILTDVTGKVLLGYDVKSEVIIGAGIVAKNISGNGYTSTTEPLPYKINSYTLNHIVIYGQSLSIGAKAVPIISSIQPYNVKTFAGGPRAYDGSNQLFLPLKDLIEDDIFSPDGKDGRGETPCAGFGNYLSTLRAMAGDDLSTRPLLLSAAGHGGYSISELEKDTTWYNDYFLEHIRQGNAITNDYYMGLVYYIQGETDIDDGVSKSFYSGKFGTMIDDINVAANTISGKSDTTYILTYQLSYGCKLSDAVYSTQQDYHDTHDLVYITTPTYILPHGPDGTHLTNVGSKLLGAYGAKSYNQMLNGNKPKCLKVKSVTLRGTVLNCTFDVPVPPLQLNTDDLAMTLDYGFVVTVDDVPVDILSINITSYDTVTLKLNSEPSGVVKLRYALDNIATDVFIKDGASGNLTDSNSETITLLNETYTLVNPCTHFTKTAIKLGE
Physico‐chemical
properties
protein length:702 AA
molecular weight: 76670,95590 Da
isoelectric point:4,54197
aromaticity:0,07977
hydropathy:-0,21339

Domains

Domains [InterPro]
Coil
Unmapped
20–40
Coil SSF52266
DC_0547
STR
29–701
DC_0547
IPR036514
STR
319–578
IPR036514
IPR005181
ENZ
388–562
IPR005181
AFI55336.1
1 702
Architecture
STR
STR 29-701 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AFI55336.1
1 702
Domain Start End Length (AA) Confidence
N-terminal 1 611 611 0,6963
Central domain 612 691 81 0,3638
C-terminal 692 702 10 0,9894
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-611
Central
612-691
C-terminal
692-702

Taxonomy

  Name Taxonomy ID Lineage
Phage Halocynthia phage JM-2012
[NCBI] 		1173297 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Halocynthia roretzi
[NCBI] 		7729 Eukaryota > Metazoa > Chordata > Tunicata > Ascidiacea > Stolidobranchia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFI55336.1 [NCBI]
Genbank nucleotide accession
JQ340088 [NCBI]
CDS location
range 50991 -> 53099
strand -
CDS
ATGAATGATATAAACGTTGATTTAGTCTTATTAGAGTCTCAACGTCATGCTTCTAGAGTAGAAGAATTAACTCAGGAAGTTGGCGGTAAGATGGTAGAAATCGATAAAGCTAAAGATGATGCCATTGACGAGTTTAACAGTAAACGTGAGGAGTTTGAACAAGCTACCACTACGAGTATAAACGAATTTAAAACTAACCAGGAATCTAAATTAGGTGAAATTGAAACTGAGCATTCCGCTAAATTGGACGAACTTGAAGCTGCTAAGCAATCCATACCTACAGAAGTAGTTAATCAGTGGGAAGCAGATAAGCCTGAGTTCAGACAGACCTTGGTAACAGAAGCAGTTCAAGCAACGGCAGATAATGCTAGTCGTGCAGAAAGTGCTTTAGATTCTATAATACTCACCGGAATCATTTATACAACTGTAAGTGAAGGTGTTACTAACACTAGTAATGGTGAGTTCTTTAAGGTTATATCAACATCAGTAGATATCTATATAGATATCTACCTCAATATAGGGGATGGTAATTCTGAATTAATTAAAACCTATCCATCGACAGCTAGTATAGAATATATTAAATCTGACATACTTAAGTTAGCAAATGACTTAACGGATAAAGGTTTATTAGATTACCTAGGTGATGGAACTGTAGTTCCAATTATTACAGATAAGAATCTTAATATATTGTTGGGTTACAACAAACAAACTCAAGAACTAATCGGTGCAGGTCTTAATAAACAGCGTAACGGCGAAGAGCTAATAGTTAATTATTTAGGTACCGAAGTTGTTCCTATATTAACTGATGTTACTGGTAAGGTACTATTAGGTTATGATGTTAAATCGGAAGTTATAATCGGTGCGGGTATAGTAGCTAAAAATATTTCTGGTAACGGCTATACATCCACCACAGAACCGTTACCCTATAAGATCAATTCGTATACATTAAATCATATCGTAATTTATGGTCAATCATTATCTATAGGTGCTAAAGCAGTTCCTATAATAAGTTCAATACAACCTTACAACGTTAAGACGTTTGCTGGAGGACCTAGAGCATATGATGGTTCAAACCAATTATTCTTACCGTTAAAAGATCTAATTGAAGATGACATCTTTTCACCAGATGGTAAAGATGGTCGTGGTGAGACTCCCTGTGCTGGTTTTGGTAACTACTTATCAACGTTAAGAGCTATGGCTGGAGATGACTTATCGACAAGACCACTACTCCTATCTGCGGCGGGTCACGGTGGGTATTCAATTAGTGAACTAGAAAAAGATACTACTTGGTATAACGACTATTTCTTAGAGCATATTCGTCAAGGTAACGCTATTACTAATGATTATTATATGGGTCTTGTCTACTACATCCAAGGTGAAACTGATATAGATGATGGTGTTAGTAAGTCATTTTACTCAGGTAAATTTGGAACTATGATCGATGATATTAATGTTGCTGCGAATACGATAAGTGGTAAGTCTGATACGACCTATATCTTAACCTACCAACTATCTTATGGTTGTAAATTAAGCGATGCGGTATACAGTACTCAACAAGATTACCACGATACCCATGATCTTGTATATATTACTACACCAACCTATATACTTCCACATGGTCCAGATGGAACTCACTTAACTAATGTTGGCTCTAAGTTATTGGGTGCGTATGGCGCAAAATCATATAATCAAATGCTTAATGGTAATAAACCTAAGTGTTTAAAAGTTAAATCGGTAACTTTACGGGGTACAGTTCTGAACTGTACGTTCGACGTTCCAGTACCACCATTACAACTGAATACTGACGACTTAGCTATGACTTTAGATTACGGGTTTGTTGTAACTGTAGATGATGTTCCTGTTGATATATTAAGTATTAACATTACATCGTATGACACAGTTACCTTAAAATTAAATTCTGAGCCATCTGGTGTAGTGAAGTTAAGATATGCGTTAGATAATATAGCCACTGATGTATTTATAAAAGATGGTGCGTCTGGTAATCTTACTGATAGTAATTCTGAAACTATAACATTATTAAATGAGACTTATACATTAGTTAATCCTTGTACTCACTTTACGAAAACAGCAATCAAATTAGGAGAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f4ceae144d311d0df88066a7d63ddfadc1c3174e2ca9c265a9579a445a6b9f9b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7735
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophage from diseased seasquirt, Halocynthia roretzi, showing soft tunic syndrome Mun,J.Y., Jang,H.N., Ha,M.A., Nho,S.W., Cha,I.S., Park,S.B., del Castillo,C.S., Jung,C.Y., Kim,Y.K., Kim,Y.R., Aoki,T.T. and Jung,T.S. 1982-05 — GenBank