Protein

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Genbank accession
WPK39114.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,87
Protein sequence
MSYTITKSNGNIIAIPDGTISNVYSTSLVGRITPAYGQSLAQSTIRTLENFANNTSPRGAIKGQLWFDTRTNVMKVWIGNDPVNSTDNTSANPNHASWKSLISTVDSTIIPATNTVDLGAAANRFRVGYFSTVNTTNLVAGTTQLGATTIGGNVLPSTTSQYSIGSASLTFADIYARRFLATQEIVFSRSNGNITLGFIPLSDTAVGMKNTTDTLGSASSRIAGIYASGMYASGMYANSLSVGSGQPGYGVITNLIPSTTNAFTLGSDTNRYSKIYGMELYARDKIIPGVPDTTTMGDVNNAFGLSYINEITTSKINARTTTSSIGSQVSPFQNIYGTNLIGTSTSSKYADLAERYEADGELDTGTVVKLGGSKEITMTTLDADTEVFGVISTSAGIMMNADAGTDDTHPFVALAGRVPVKVIGPISKGDRLVASDVPGVARRITMSELQQLGPMGVYSIIGRAISSKSTSDVELVLCAIGSK
Physico‐chemical
properties
protein length:483 AA
molecular weight: 50688,27690 Da
isoelectric point:6,18706
aromaticity:0,07039
hydropathy:-0,02629

Domains

Domains [InterPro]
DC_0320
STR
1–481
DC_0320
G3DSA:2.40.300.10
RBD
349–462
G3DSA:2.40.300.10
WPK39114.1
1 483
Architecture
STR
STR 1-481 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WPK39114.1
1 483
Domain Start End Length (AA) Confidence
N-terminal 1 248 248 0,2603
Central domain 249 447 200 0,2759
C-terminal 448 483 35 0,9680
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-248
Central
249-447
C-terminal
448-483

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Cassandra
[NCBI] 		3092175 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa PAO1
[NCBI] 		208964 Bacteria > Proteobacteria > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPK39114.1 [NCBI]
Genbank nucleotide accession
OR805292 [NCBI]
CDS location
range 204994 -> 206445
strand -
CDS
ATGTCATATACAATTACAAAGTCAAACGGAAATATAATAGCAATACCTGATGGTACTATATCTAACGTATATTCTACTAGCTTAGTTGGTAGAATAACACCTGCATATGGACAATCTTTAGCACAGTCTACAATAAGAACATTAGAAAACTTTGCAAATAATACATCTCCTCGGGGTGCAATAAAAGGGCAACTTTGGTTTGATACTAGAACTAATGTAATGAAAGTGTGGATAGGAAACGATCCTGTCAATTCTACAGATAACACTAGTGCAAACCCAAATCATGCATCGTGGAAATCGTTAATAAGTACAGTAGATTCTACAATAATTCCTGCAACAAATACAGTAGATTTAGGCGCTGCCGCAAATAGATTCAGAGTCGGTTATTTCAGCACAGTTAATACAACTAATTTAGTTGCAGGAACAACCCAGTTAGGTGCTACTACTATAGGCGGTAATGTACTACCTAGTACAACTTCCCAATATTCTATAGGTTCGGCAAGTTTAACATTTGCAGATATATATGCAAGAAGATTTCTTGCAACACAAGAAATTGTATTTTCTAGATCAAACGGTAATATTACTTTAGGTTTTATACCTCTTAGTGACACAGCAGTTGGGATGAAAAACACAACTGATACTCTAGGTAGTGCTTCGAGTAGAATTGCAGGTATATATGCAAGCGGGATGTATGCAAGCGGGATGTATGCTAATAGTTTATCAGTCGGATCCGGGCAGCCAGGTTATGGTGTTATTACTAACTTAATACCTAGCACAACTAATGCATTTACTTTAGGTTCAGATACAAATAGATATTCTAAAATATACGGTATGGAATTATATGCAAGAGATAAGATAATTCCTGGTGTACCTGATACTACCACAATGGGCGATGTTAATAATGCATTTGGCCTATCATACATAAACGAAATAACAACATCTAAAATAAATGCTAGAACAACTACTTCTTCTATAGGAAGCCAAGTTAGTCCTTTCCAAAATATTTACGGAACTAATTTAATAGGTACGTCTACATCAAGTAAATATGCAGATCTTGCAGAAAGATATGAAGCTGATGGAGAATTAGATACAGGAACTGTAGTTAAATTAGGTGGTTCTAAAGAAATAACAATGACAACACTCGATGCAGATACAGAAGTATTCGGTGTAATAAGTACAAGTGCAGGTATAATGATGAATGCTGACGCAGGGACAGATGACACTCATCCGTTTGTCGCGTTAGCAGGAAGAGTACCTGTGAAAGTAATAGGACCCATATCTAAGGGCGATAGATTAGTTGCAAGTGATGTTCCTGGTGTTGCCCGCAGAATAACAATGTCAGAATTGCAACAGTTAGGTCCGATGGGTGTATATAGTATTATAGGACGTGCTATTAGTTCTAAATCAACATCGGATGTAGAATTAGTTTTATGTGCAATAGGCTCTAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1e4fd16a3161f12594689224a2d09db86ffcdb8739ea237cc96115aae90fb294
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7294
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phage Paride can kill dormant, antibiotic-tolerant cells Maffei,E., Harms,A. and Humolli,D. — — GenBank