Protein

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Genbank accession
BCD83233.1 [GenBank]
Protein name
phage tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,74
TSP
Evidence RBPdetect2
Probability 0,85
Protein sequence
MINLPTLTRFSGAVPDRANMNREEFAMATYYYLRYINDEFVPDARNLVSEMNSQLNSFASQMNNIKSDTQALKDDTAAIKQQTAALRDDTQTLHDQTQEYRNDAQNFKTQAGQYKELAKNYANADSDVEVEPGYYSAKHWALKAQNLANDTAAILPDGAINDSAISSNATWSSQKIDSVLAKIDLSNVAASALLGKILDVDGDGSGLDADMLDGMQPSSANSANTIVQRDANGNFSAGTITASLNGNASTATKLKTTRTIALSGDVSGSASFDGSGNVTISTTVISNASHNHDDRYYTKSQSDDRYLGKSAKAVDSDKLDGKDSSHFYRVVSTASANVGVDGESHWITVAEAPDSRRHGIVIVSDQDSSDHSFIEIDWMRSYADTNFTVLNVGGHGNRILGVRVLYDTSDNTYKKKYLQIKVNRQSTYYVAVMAHYNNSGWNTINAVTPVVEDSKSGYAVWGNVIENLDIASIGTQQGIVCGGTLKTGGGAYIGSEVVANRIECGYDHNVSNSIGCSNWFRSSGSTGWYNATYGGGIYMTDSTWVRTYNNKSFYSANVIRADGGFQVDGKWIASSDGNTLYENNTPIRDKYHHKIVAQVVTSNITASSFHRYLVDTSGGTKTITLPSSPANYDEIYFVDLKGTFDSTHLTIARNGKNIMGLAEDLIADTKNVSFGLIYYNGDWRLI
Physico‐chemical
properties
protein length:686 AA
molecular weight: 74653,10870 Da
isoelectric point:5,28287
aromaticity:0,09184
hydropathy:-0,43688

Domains

Domains [InterPro]
DC_1028
STR
3–490
DC_1028 DC_1946
IPR007001
RBD
484–571
IPR007001
BCD83233.1
1 686
Architecture
STR
RBD
ATT
STR 3-490 | RBD 491-536 | ATT 537-685 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
BCD83233.1
1 686
Domain Start End Length (AA) Confidence
N-terminal 1 425 425 0,6960
Central domain 426 624 200 0,4464
C-terminal 625 686 61 0,9925
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-425
Central
426-624
C-terminal
625-686

Taxonomy

  Name Taxonomy ID Lineage
Phage Nitratiruptor phage NrS-4
[NCBI] 		2725866 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Nitratiruptor sp. YY08-13
[NCBI] 		2724898 Campylobacterota > Epsilonproteobacteria > Nautiliales > Nitratiruptoraceae > Nitratiruptor >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BCD83233.1 [NCBI]
Genbank nucleotide accession
LC545445.1 [NCBI]
CDS location
range 36768 -> 38828
strand +
CDS
ATGATAAATCTGCCGACTTTGACAAGATTTAGTGGCGCCGTTCCTGATAGAGCGAATATGAATAGAGAAGAGTTCGCGATGGCGACCTACTACTATCTGCGCTATATCAATGATGAATTTGTCCCCGATGCGCGAAATCTTGTAAGCGAGATGAACAGCCAGCTCAATAGCTTTGCAAGCCAGATGAATAACATCAAAAGCGATACGCAAGCACTCAAGGACGATACTGCAGCAATCAAGCAGCAAACCGCTGCGCTAAGAGATGATACGCAGACGCTGCATGACCAGACACAAGAGTATCGCAACGATGCGCAAAATTTCAAAACGCAAGCCGGCCAATACAAAGAGTTGGCGAAAAACTATGCCAATGCAGATAGTGATGTAGAAGTAGAGCCAGGCTACTACAGCGCAAAACACTGGGCGCTCAAGGCGCAAAATCTTGCAAACGATACCGCTGCGATCTTGCCAGATGGCGCTATCAACGATAGTGCAATCTCCTCAAACGCCACATGGAGCAGCCAGAAGATAGATAGCGTTTTGGCCAAAATAGATCTCTCCAATGTGGCTGCAAGCGCGCTTCTTGGAAAAATACTCGATGTGGATGGCGATGGGAGCGGATTAGATGCGGATATGCTCGATGGCATGCAGCCATCATCTGCAAACAGTGCCAATACAATCGTGCAACGTGATGCAAATGGAAACTTCAGCGCTGGCACCATCACAGCTTCGCTCAATGGCAACGCCTCAACTGCGACAAAACTCAAAACCACTCGTACCATTGCCTTGAGTGGGGATGTGAGCGGATCTGCAAGTTTCGATGGGAGTGGCAACGTAACCATCTCTACCACTGTGATAAGCAACGCATCCCACAACCATGATGATAGATACTATACAAAATCGCAAAGTGATGACAGATATTTAGGAAAAAGTGCAAAGGCAGTAGATAGCGATAAGCTTGATGGTAAAGATTCCTCACATTTTTACAGAGTAGTTTCAACTGCATCTGCAAATGTTGGAGTTGATGGTGAGAGCCATTGGATAACTGTTGCTGAAGCTCCAGATTCAAGAAGGCATGGTATTGTGATTGTATCTGACCAAGATAGTAGTGACCACTCATTTATTGAAATAGATTGGATGCGAAGTTATGCTGATACAAATTTTACCGTACTGAATGTTGGCGGACATGGAAATAGGATTTTAGGTGTTAGGGTGCTTTACGACACGAGTGATAACACCTATAAGAAAAAATATCTTCAAATTAAAGTTAATAGACAATCAACTTATTATGTAGCAGTTATGGCTCATTACAATAATAGCGGTTGGAACACCATCAATGCGGTAACACCAGTTGTAGAAGATAGTAAAAGTGGGTATGCAGTCTGGGGAAATGTAATAGAAAATCTTGATATAGCATCTATTGGTACACAACAAGGGATTGTCTGTGGTGGCACACTAAAAACAGGTGGTGGTGCTTATATAGGAAGTGAAGTTGTAGCAAATAGGATTGAATGTGGATATGACCACAATGTAAGCAATTCAATAGGTTGCTCTAATTGGTTCAGAAGCTCTGGTAGCACTGGTTGGTATAACGCCACTTATGGCGGTGGGATTTATATGACAGATTCCACTTGGGTTCGTACATATAATAATAAATCTTTTTATAGTGCAAATGTTATTCGTGCTGATGGTGGATTTCAAGTAGATGGAAAGTGGATTGCTTCAAGTGATGGGAATACTTTATATGAAAACAATACGCCAATCCGTGATAAGTATCATCACAAAATAGTTGCTCAAGTTGTAACCTCAAATATTACTGCAAGCTCATTTCATAGATATTTGGTAGATACAAGTGGTGGTACAAAGACAATTACTTTACCATCATCTCCAGCTAATTATGATGAGATATATTTTGTTGATTTGAAAGGGACATTTGACAGTACTCATTTAACGATTGCAAGAAATGGAAAAAATATCATGGGATTAGCTGAAGATTTGATAGCTGATACTAAAAATGTTTCATTTGGGTTGATTTATTACAACGGAGATTGGAGATTAATATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
8ef7692b155f24cdda76a17595f261ea879e542bf2827d556279c260527f55b4
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6741
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic insights into the co-evolution between the temperate phages and deep-sea chemolithoautotrophic Epsilonbacteraeota, Nitratiruptor Yoshida-Takashima,Y., Takaki,Y., Yoshida,M., Nunoura,T. and Takai,K. 2022-11-01 — GenBank