Protein

View in Explore
Genbank accession
APD21515.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,88
Protein sequence
MDIKKILLASLLSSTAIVGGCDLSDKKAATALKLAQDTHTLVENTREKAEEALNLVRNANGKPGPQGPQGQTGDKGPQGPQGQTGHKGHKGTQGPQGQTGDKGAQGPQGPQGQTGDKGPQGPQGQTGDKGPQGPQGQTGDKGPQGPQGQTGEKGPQGPQGQTGEKGPQGPQGPQGQTGDKGPQGPQGQTGDKGPQGPQGPQGQTGDKGPQGPQGQTGEQGPQGPQGPKGQTGHKGPQGPQGQTGDKGPQGPQGQTGDKGPQGPQGQTGDKGPQGPQGQTGDKGPQGPQGPKGQTGDKGPKGPQGPQGQTGEQGPK
Physico‐chemical
properties
protein length:315 AA
molecular weight: 30939,88670 Da
isoelectric point:9,24846
aromaticity:0,00000
hydropathy:-1,57556

Domains

Domains [InterPro]
PS51257
STR
1–21
PS51257 Coil DC_1341 DC_0620
DC_1581
ATT
1–60
DC_1581 IPR050149
DC_1431
STR
45–128
DC_1431 IPR008160
IPR008160
STR
60–116
IPR008160
APD21515.1
1 315
Architecture
ATT
STR
STR
STR
ATT 1-60 | STR 61-128 | STR 148-215 | STR 246-315
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Liberibacter phage HHCA1-2
[NCBI] 		1903185 No lineage information
Host Candidatus Liberibacter asiaticus
[NCBI] 		34021 Bacteria > Proteobacteria > Alphaproteobacteria > Rhizobiales > Rhizobiaceae > Candidatus Liberibacter

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
APD21515.1 [NCBI]
Genbank nucleotide accession
KX879602.1 [NCBI]
CDS location
range 35722 -> 36669
strand +
CDS
ATGGATATCAAGAAAATATTATTAGCATCTTTATTGTCATCAACTGCTATAGTAGGAGGTTGTGATCTTTCTGACAAAAAGGCTGCAACAGCTTTGAAGCTTGCACAAGATACTCATACATTGGTGGAAAACACTAGAGAAAAGGCTGAAGAAGCTTTGAACCTTGTGAGAAATGCCAACGGAAAACCAGGACCTCAAGGACCTCAAGGACAGACAGGAGATAAAGGACCTCAAGGACCTCAAGGACAGACAGGACATAAAGGACATAAAGGAACTCAAGGACCTCAAGGACAGACAGGAGATAAAGGAGCTCAAGGACCTCAAGGACCTCAAGGACAGACAGGAGATAAAGGACCTCAAGGACCTCAAGGACAGACAGGAGATAAAGGACCTCAAGGACCTCAAGGACAGACAGGAGATAAAGGACCTCAAGGACCTCAAGGACAGACAGGAGAAAAAGGACCTCAAGGACCTCAAGGACAGACAGGAGAAAAAGGACCTCAAGGACCTCAAGGACCTCAAGGACAGACAGGAGATAAAGGACCTCAAGGACCTCAAGGACAGACAGGAGATAAAGGACCTCAAGGACCTCAAGGACCTCAAGGACAGACAGGAGATAAAGGACCTCAAGGACCTCAAGGACAGACAGGAGAACAAGGACCTCAAGGACCTCAAGGACCTAAAGGACAGACAGGACATAAAGGACCTCAAGGACCTCAAGGACAGACAGGAGATAAAGGACCTCAAGGACCTCAAGGACAGACAGGAGATAAAGGACCTCAAGGACCTCAAGGACAGACAGGAGATAAAGGACCTCAAGGACCTCAAGGACAGACAGGAGATAAAGGACCTCAAGGACCTCAAGGACCTAAAGGACAGACAGGAGATAAAGGACCTAAAGGACCTCAAGGACCTCAAGGACAGACAGGAGAACAAGGACCTAAGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
7a600d31ed6f29761771be995e2fc142fe6fbdac6d0f84f2135c93ef2a52306f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6064
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Two 'Candidatus Liberibacter asiaticus' recently found in California harbor different prophages Zheng,Z., Wu,F., Deng,X. and Chen,J. 2017-06 — GenBank